PPD: A Manually Curated Database for Experimentally Verified Prokaryotic Promoters

Facilitating Protein Expression with Portable 5′-UTR Secondary Structures in Bacillus licheniformis

(2020) Jun Xiao et al.   ACS Synthetic Biology

iProEP: A Computational Predictor for Predicting Promoter

(2019) Hong-Yan Lai et al.   Molecular Therapy-Nucleic Acids

Modulating Heterologous Gene Expression with Portable mRNA-Stabilizing 5′-UTR Sequences

(2018) Sandra C. Viegas et al.   ACS Synthetic Biology

RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12

(2018) Alberto Santos-Zavaleta et al.   NUCLEIC ACIDS RESEARCH

Comparative genomic analysis of translation initiation mechanisms for genes lacking the Shine–Dalgarno sequence in prokaryotes

(2017) So Nakagawa et al.   NUCLEIC ACIDS RESEARCH

dRNA-seq transcriptional profiling of the FK506 biosynthetic gene cluster in Streptomyces tsukubaensis NRRL18488 and general analysis of the transcriptome

(2017) Judith S. Bauer et al.   RNA Biology

Local and global regulation of transcription initiation in bacteria

(2016) Douglas F. Browning et al.   NATURE REVIEWS MICROBIOLOGY

Differential RNA-seq (dRNA-seq) for annotation of transcriptional start sites and small RNAs in Helicobacter pylori

(2015) Thorsten Bischler et al.   METHODS

DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators

(2015) Georgios Georgakilas et al.   NUCLEIC ACIDS RESEARCH

Functional Characterization of Bacteria Isolated from Ancient Arctic Soil Exposes Diverse Resistance Mechanisms to Modern Antibiotics

(2015) Gabriel G. Perron et al.   PLoS One

Differential RNA-seq: the approach behind and the biological insight gained

(2014) Cynthia M Sharma et al.   CURRENT OPINION IN MICROBIOLOGY

Global Transcriptional Start Site Mapping Using Differential RNA Sequencing Reveals Novel Antisense RNAs in Escherichia coli

(2014) Maureen K. Thomason et al.   JOURNAL OF BACTERIOLOGY

iPro54-PseKNC: a sequence-based predictor for identifying sigma-54 promoters in prokaryote with pseudo k-tuple nucleotide composition

(2014) Hao Lin et al.   NUCLEIC ACIDS RESEARCH

Structural Properties of Prokaryotic Promoter Regions Correlate with Functional Features

(2014) Pieter Meysman et al.   PLoS One

ppdb: plant promoter database version 3.0

(2013) Ayaka Hieno et al.   NUCLEIC ACIDS RESEARCH

Transcriptome analysis using next-generation sequencing

(2012) Kai-Oliver Mutz et al.   CURRENT OPINION IN BIOTECHNOLOGY

EPD and EPDnew, high-quality promoter resources in the next-generation sequencing era

(2012) René Dreos et al.   NUCLEIC ACIDS RESEARCH

Selective Translation of Leaderless mRNAs by Specialized Ribosomes Generated by MazF in Escherichia coli

(2011) Oliver Vesper et al.   CELL

Across Bacterial Phyla, Distantly-Related Genomes with Similar Genomic GC Content Have Similar Patterns of Amino Acid Usage

(2011) John Lightfield et al.   PLoS One

The primary transcriptome of the major human pathogen Helicobacter pylori

(2010) Cynthia M. Sharma et al.   NATURE

AGRIS: the Arabidopsis Gene Regulatory Information Server, an update

(2010) A. Yilmaz et al.   NUCLEIC ACIDS RESEARCH