A repeatable and quantitative DNA metabarcoding assay to characterize mixed strongyle infections in horses

Not playing by the rules: Unusual patterns in the epidemiology of parasites in a natural population of feral horses (Equus caballus) on Sable Island, Canada

(2020) Emily Jenkins et al.   International Journal for Parasitology-Parasites and Wildlife

A database for ITS2 sequences from nematodes

(2020) Matthew L. Workentine et al.   BMC GENETICS

Quantitative genetics of gastrointestinal strongyle burden and associated body condition in feral horses

(2019) Susannah Gold et al.   International Journal for Parasitology-Parasites and Wildlife

Validation of ITS-2 rDNA nemabiome sequencing for ovine gastrointestinal nematodes and its application to a large scale survey of UK sheep farms

(2019) Elizabeth Redman et al.   VETERINARY PARASITOLOGY

Equine strongyle communities are constrained by horse sex and species dipersal-fecundity trade-off

(2018) Guillaume Sallé et al.   Parasites & Vectors

Metabarcoding analysis of strongylid nematode diversity in two sympatric primate species

(2018) Barbora Pafčo et al.   Scientific Reports

Deep amplicon sequencing as a powerful new tool to screen for sequence polymorphisms associated with anthelmintic resistance in parasitic nematode populations

(2018) Russell W. Avramenko et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Nonstrangulating intestinal infarctions associated with Strongylus vulgaris : Clinical presentation and treatment outcomes of 30 horses (2008-2016)

(2017) T. H. Pihl et al.   EQUINE VETERINARY JOURNAL

The use of nemabiome metabarcoding to explore gastro-intestinal nematode species diversity and anthelmintic treatment effectiveness in beef calves

(2017) Russell W. Avramenko et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

This Gut Ain’t Big Enough for Both of Us. Or Is It? Helminth–Microbiota Interactions in Veterinary Species

(2017) Laura E. Peachey et al.   TRENDS IN PARASITOLOGY

Quality filtering of Illumina index reads mitigates sample cross-talk

(2016) Erik Scott Wright et al.   BMC GENOMICS

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Negative covariance between parasite load and body condition in a population of feral horses

(2016) LUCIE DEBEFFE et al.   PARASITOLOGY

Transmission of some species of internal parasites in horse foals born in 2013 in the same pasture on a farm in Central Kentucky

(2015) S. C. Tolliver et al.   HELMINTHOLOGIA

Evaluation of Baermann apparatus sedimentation time on recovery of Strongylus vulgaris and S. edentatus third stage larvae from equine coprocultures

(2015) Jennifer L. Bellaw et al.   VETERINARY PARASITOLOGY

Exploring the Gastrointestinal “Nemabiome”: Deep Amplicon Sequencing to Quantify the Species Composition of Parasitic Nematode Communities

(2015) Russell W. Avramenko et al.   PLoS One

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

From barcoding single individuals to metabarcoding biological communities: towards an integrative approach to the study of global biodiversity

(2014) Melania E. Cristescu   TRENDS IN ECOLOGY & EVOLUTION

The specific diagnosis of gastrointestinal nematode infections in livestock: Larval culture technique, its limitations and alternative DNA-based approaches

(2014) Florian Roeber et al.   VETERINARY PARASITOLOGY

Anthelmintic resistance in equine parasites—Current evidence and knowledge gaps

(2014) M.K. Nielsen et al.   VETERINARY PARASITOLOGY

Unipro UGENE: a unified bioinformatics toolkit

(2012) Konstantin Okonechnikov et al.   BIOINFORMATICS

Fecundity of various species of strongylids (Nematoda: Strongylidae)—parasites of domestic horses

(2012) T. A. Kuzmina et al.   PARASITOLOGY RESEARCH

Real-time PCR evaluation of Strongylus vulgaris in horses on farms in Denmark and Central Kentucky

(2012) M.K. Nielsen et al.   VETERINARY PARASITOLOGY

Observations on development of natural infection and species composition of small strongyles in young equids in Kentucky

(2011) Eugene T. Lyons et al.   PARASITOLOGY RESEARCH

Evaluation of conventional PCR for detection of Strongylus vulgaris on horse farms

(2011) M.K. Bracken et al.   VETERINARY PARASITOLOGY

Worlds within worlds: evolution of the vertebrate gut microbiota

(2008) Ruth E. Ley et al.   NATURE REVIEWS MICROBIOLOGY

Anthelmintic resistance in cyathostomins of brood horses in Ukraine and influence of anthelmintic treatments on strongylid community structure

(2008) Tetyana A. Kuzmina et al.   VETERINARY PARASITOLOGY

Illustrated identification keys to strongylid parasites (strongylidae: Nematoda) of horses, zebras and asses (Equidae)

(2008) J. Ralph Lichtenfels et al.   VETERINARY PARASITOLOGY

Detection and semi-quantification of Strongylus vulgaris DNA in equine faeces by real-time quantitative PCR

(2007) Martin K. Nielsen et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY