Long-term mineral fertilizer substitution by organic fertilizer and the effect on the abundance and community structure of ammonia-oxidizing archaea and bacteria in paddy soil of south China

Partial substitution of chemical nitrogen with organic nitrogen improves rice yield, soil biochemical indictors and microbial composition in a double rice cropping system in south China

(2020) Xianglin Dai et al.   SOIL & TILLAGE RESEARCH

Distinct responses of ammonia-oxidizing bacteria and archaea to green manure combined with reduced chemical fertilizer in a paddy soil

(2018) Yu Fang et al.   JOURNAL OF SOILS AND SEDIMENTS

Soil C/N and pH together as a comprehensive indicator for evaluating the effects of organic substitution management in subtropical paddy fields after application of high-quality amendments

(2018) Xianglin Dai et al.   GEODERMA

Response of ammonia-oxidizing archaea and bacteria in calcareous soil to mineral and organic fertilizer application and their relative contribution to nitrification

(2017) Rui Tao et al.   SOIL BIOLOGY & BIOCHEMISTRY

Distinct drivers of activity, abundance, diversity and composition of ammonia-oxidizers: evidence from a long-term field experiment

(2017) Junjie Guo et al.   SOIL BIOLOGY & BIOCHEMISTRY

Effects of combined application of nitrogen fertilizer and biochar on the nitrification and ammonia oxidizers in an intensive vegetable soil

(2017) Qing-Fang Bi et al.   AMB Express

Changing roles of ammonia-oxidizing bacteria and archaea in a continuously acidifying soil caused by over-fertilization with nitrogen

(2016) He Song et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ammonia-oxidizing bacteria are more responsive than archaea to nitrogen source in an agricultural soil

(2016) Yang Ouyang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Meta-analysis reveals ammonia-oxidizing bacteria respond more strongly to nitrogen addition than ammonia-oxidizing archaea

(2016) Chelsea J. Carey et al.   SOIL BIOLOGY & BIOCHEMISTRY

pH regulates ammonia-oxidizing bacteria and archaea in paddy soils in Southern China

(2015) Hu Li et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Effects of long-term application of chemical and organic fertilizers on the abundance of microbial communities involved in the nitrogen cycle

(2015) Ruibo Sun et al.   APPLIED SOIL ECOLOGY

Contributions of ammonia-oxidizing archaea and bacteria to nitrification in Oregon forest soils

(2015) Xinda Lu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Ammonia-oxidizing Bacteria of theNitrosospiracluster 1 dominate over ammonia-oxidizing Archaea in oligotrophic surface sediments near the South Atlantic Gyre

(2015) Lorenzo Lagostina et al.   Environmental Microbiology Reports

The large-scale distribution of ammonia oxidizers in paddy soils is driven by soil pH, geographic distance, and climatic factors

(2015) Hang-Wei Hu et al.   Frontiers in Microbiology

Ammonia oxidizer abundance in paddy soil profile with different fertilizer regimes

(2014) Jichen Wang et al.   APPLIED SOIL ECOLOGY

Multi-factorial drivers of ammonia oxidizer communities: evidence from a national soil survey

(2013) Huaiying Yao et al.   ENVIRONMENTAL MICROBIOLOGY

Optimizing nitrogen supply increases rice yield and nitrogen use efficiency by regulating yield formation factors

(2013) Biao Sui et al.   FIELD CROPS RESEARCH

Long-term fate of nitrate fertilizer in agricultural soils

(2013) M. Sebilo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversity, Physiology, and Niche Differentiation of Ammonia-Oxidizing Archaea

(2012) Roland Hatzenpichler   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Nitrification of archaeal ammonia oxidizers in acid soils is supported by hydrolysis of urea

(2012) Lu Lu et al.   ISME Journal

Current insights into the autotrophic thaumarchaeal ammonia oxidation in acidic soils

(2012) Ji-Zheng He et al.   SOIL BIOLOGY & BIOCHEMISTRY

Archaeal and bacterial ammonia-oxidisers in soil: the quest for niche specialisation and differentiation

(2012) James I. Prosser et al.   TRENDS IN MICROBIOLOGY

A review of ammonia-oxidizing bacteria and archaea in Chinese soils

(2012) Ju-Pei Shen et al.   Frontiers in Microbiology

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

amoA-based consensus phylogeny of ammonia-oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions

(2011) Michael Pester et al.   ENVIRONMENTAL MICROBIOLOGY

Stimulation of thaumarchaeal ammonia oxidation by ammonia derived from organic nitrogen but not added inorganic nitrogen

(2011) Špela Levičnik-Höfferle et al.   FEMS MICROBIOLOGY ECOLOGY

Spatial distribution of ammonia-oxidizing bacteria and archaea across a 44-hectare farm related to ecosystem functioning

(2011) Ella Wessén et al.   ISME Journal

Ammonia-oxidizing archaea have more important role than ammonia-oxidizing bacteria in ammonia oxidation of strongly acidic soils

(2011) Li-Mei Zhang et al.   ISME Journal

Niche specialization of terrestrial archaeal ammonia oxidizers

(2011) C. Gubry-Rangin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Long-Term Field Fertilization Significantly Alters Community Structure of Ammonia-Oxidizing Bacteria rather than Archaea in a Paddy Soil

(2011) Yucheng Wu et al.   SOIL SCIENCE SOCIETY OF AMERICA JOURNAL

Responses of bacterial and archaeal ammonia oxidizers to soil organic and fertilizer amendments under long-term management

(2010) Ella Wessén et al.   APPLIED SOIL ECOLOGY

Archaea rather than bacteria control nitrification in two agricultural acidic soils

(2010) Cécile Gubry-Rangin et al.   FEMS MICROBIOLOGY ECOLOGY

Nitrification driven by bacteria and not archaea in nitrogen-rich grassland soils

(2009) H. J. Di et al.   Nature Geoscience

Reducing environmental risk by improving N management in intensive Chinese agricultural systems

(2009) X.-T. Ju et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria

(2008) Graeme W. Nicol et al.   ENVIRONMENTAL MICROBIOLOGY

Transformation of the Nitrogen Cycle: Recent Trends, Questions, and Potential Solutions

(2008) J. N. Galloway et al.   SCIENCE