GAG-DB, the New Interface of the Three-Dimensional Landscape of Glycosaminoglycans

Glycosaminoglycan–Protein Interactions: The First Draft of the Glycosaminoglycan Interactome

(2020) Sylvain D. Vallet et al.   JOURNAL OF HISTOCHEMISTRY & CYTOCHEMISTRY

Leveraging glycomics data in glycoprotein 3D structure validation with Privateer

(2020) Haroldas Bagdonas et al.   Beilstein Journal of Organic Chemistry

Three-Dimensional Structures of Carbohydrates and Where to Find Them

(2020) Sofya I. Scherbinina et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Constructing 3-Dimensional Atomic-Resolution Models of Nonsulfated Glycosaminoglycans with Arbitrary Lengths Using Conformations from Molecular Dynamics

(2020) Elizabeth K. Whitmore et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Compositional and structural analysis of glycosaminoglycans in cell-derived extracellular matrices

(2019) João C. Silva et al.   GLYCOCONJUGATE JOURNAL

Hyaluronan biology: A complex balancing act of structure, function, location and context

(2019) Stavros Garantziotis et al.   MATRIX BIOLOGY

Sequencing Heparan Sulfate Using HILIC LC-NETD-MS/MS

(2019) Jiandong Wu et al.   ANALYTICAL CHEMISTRY

PDBe-KB: a community-driven resource for structural and functional annotations

(2019) et al.   NUCLEIC ACIDS RESEARCH

NGL viewer: web-based molecular graphics for large complexes

(2018) Alexander S Rose et al.   BIOINFORMATICS

Automated glycan assembly as an enabling technology

(2018) Alonso Pardo-Vargas et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Multiscale modeling of glycosaminoglycan structure and dynamics: current methods and challenges

(2018) Andrew Almond   CURRENT OPINION IN STRUCTURAL BIOLOGY

So you think computational approaches to understanding glycosaminoglycan–protein interactions are too dry and too rigid? Think again!

(2018) Nehru Viji Sankaranarayanan et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Keratan sulfate, a complex glycosaminoglycan with unique functional capability

(2018) Bruce Caterson et al.   GLYCOBIOLOGY

SWISS-MODEL: homology modelling of protein structures and complexes

(2018) Andrew Waterhouse et al.   NUCLEIC ACIDS RESEARCH

Proteoglycan Chemical Diversity Drives Multifunctional Cell Regulation and Therapeutics

(2018) Nikos K. Karamanos et al.   CHEMICAL REVIEWS

UniLectin3D, a database of carbohydrate binding proteins with curated information on 3D structures and interacting ligands

(2018) François Bonnardel et al.   NUCLEIC ACIDS RESEARCH

MatrixDB: integration of new data with a focus on glycosaminoglycan interactions

(2018) Olivier Clerc et al.   NUCLEIC ACIDS RESEARCH

UniProt: a worldwide hub of protein knowledge

(2018)   NUCLEIC ACIDS RESEARCH

CATH: expanding the horizons of structure-based functional annotations for genome sequences

(2018) Ian Sillitoe et al.   NUCLEIC ACIDS RESEARCH

Leishmaniasis and glycosaminoglycans: a future therapeutic strategy?

(2018) Débora Almeida Merida-de-Barros et al.   Parasites & Vectors

GlyTouCan: an accessible glycan structure repository

(2017) Michael Tiemeyer et al.   GLYCOBIOLOGY

Glycosaminoglycans: major biological players

(2017) Sylvie Ricard-Blum   GLYCOCONJUGATE JOURNAL

Sequencing the Dermatan Sulfate Chain of Decorin

(2017) Yanlei Yu et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

LiteMol suite: interactive web-based visualization of large-scale macromolecular structure data

(2017) David Sehnal et al.   NATURE METHODS

PDBe: towards reusable data delivery infrastructure at protein data bank in Europe

(2017) Saqib Mir et al.   NUCLEIC ACIDS RESEARCH

New tools and functions in data-out activities at Protein Data Bank Japan (PDBj)

(2017) Akira R. Kinjo et al.   PROTEIN SCIENCE

PDBsum: Structural summaries of PDB entries

(2017) Roman A. Laskowski et al.   PROTEIN SCIENCE

Heparin's solution structure determined by small-angle neutron scattering

(2016) Kenneth A. Rubinson et al.   BIOPOLYMERS

Glycosaminoglycans and infection

(2016) Pyong Woo Park   Frontiers in Bioscience-Landmark

Computational analysis of interactions in structurally available protein–glycosaminoglycan complexes

(2016) Sergey A Samsonov et al.   GLYCOBIOLOGY

Glycosaminoglycanomics: where we are

(2016) Sylvie Ricard-Blum et al.   GLYCOCONJUGATE JOURNAL

Systematic protein interactome analysis of glycosaminoglycans revealed YcbS as a novel bacterial virulence factor

(2016) Felix Shih-Hsiang Hsiao et al.   Scientific Reports

Proteoglycans and Their Heterogeneous Glycosaminoglycans at the Atomic Scale

(2015) Benedict M. Sattelle et al.   BIOMACROMOLECULES

Re-visiting the structure of heparin

(2015) Benito Casu et al.   CARBOHYDRATE RESEARCH

Symbol Nomenclature for Graphical Representations of Glycans

(2015) Ajit Varki et al.   GLYCOBIOLOGY

Keratan sulfate: An up-to-date review

(2015) Vitor H. Pomin   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Fell-Muir Lecture: Heparan sulphate and the art of cell regulation: a polymer chain conducts the protein orchestra

(2015) John Gallagher   INTERNATIONAL JOURNAL OF EXPERIMENTAL PATHOLOGY

Proteoglycan form and function: A comprehensive nomenclature of proteoglycans

(2015) Renato V. Iozzo et al.   MATRIX BIOLOGY

PLIP: fully automated protein–ligand interaction profiler

(2015) Sebastian Salentin et al.   NUCLEIC ACIDS RESEARCH

Three-dimensional representations of complex carbohydrates and polysaccharides--SweetUnityMol: A video game-based computer graphic software

(2014) S. Perez et al.   GLYCOBIOLOGY

WURCS: The Web3 Unique Representation of Carbohydrate Structures

(2014) Kenichi Tanaka et al.   Journal of Chemical Information and Modeling

Coarse-Grained Model of Glycosaminoglycans

(2014) Sergey A. Samsonov et al.   Journal of Chemical Information and Modeling

Coarse-Grained Model of Glycosaminoglycans in Aqueous Salt Solutions. A Field-Theoretical Approach

(2014) Andrei L. Kolesnikov et al.   JOURNAL OF PHYSICAL CHEMISTRY B

ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank

(2014) David Sehnal et al.   NUCLEIC ACIDS RESEARCH

Microsecond kinetics in model single- and double-stranded amylose polymers

(2014) Benedict M. Sattelle et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Biosynthesis and function of chondroitin sulfate

(2013) Tadahisa Mikami et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Large-Scale Investigation of Leishmania Interaction Networks with Host Extracellular Matrix by Surface Plasmon Resonance Imaging

(2013) Marie Fatoux-Ardore et al.   INFECTION AND IMMUNITY

The Solution Structure of Heparan Sulfate Differs from That of Heparin

(2013) Sanaullah Khan et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Heparin–protein interactions: From affinity and kinetics to biological roles. Application to an interaction network regulating angiogenesis

(2013) Franck Peysselon et al.   MATRIX BIOLOGY

Glycosaminoglycan Glycomics Using Mass Spectrometry

(2013) Joseph Zaia   MOLECULAR & CELLULAR PROTEOMICS

PDBe: Protein Data Bank in Europe

(2013) Aleksandras Gutmanas et al.   NUCLEIC ACIDS RESEARCH

Detection of the1H and15N NMR Resonances of Sulfamate Groups in Aqueous Solution: A New Tool for Heparin and Heparan Sulfate Characterization

(2011) Derek J. Langeslay et al.   ANALYTICAL CHEMISTRY

A Systems Biology Approach for the Investigation of the Heparin/Heparan Sulfate Interactome

(2011) Alessandro Ori et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

High-performance liquid chromatography-mass spectrometry for mapping and sequencing glycosaminoglycan-derived oligosaccharides

(2010) Nicola Volpi et al.   Nature Protocols

Crystal contacts as nature's docking solutions

(2009) Evgeny Krissinel   JOURNAL OF COMPUTATIONAL CHEMISTRY

Semi-Rigid Solution Structures of Heparin by Constrained X-ray Scattering Modelling: New Insight into Heparin–Protein Complexes

(2009) Sanaullah Khan et al.   JOURNAL OF MOLECULAR BIOLOGY

GlycoCT—a unifying sequence format for carbohydrates

(2008) S. Herget et al.   CARBOHYDRATE RESEARCH