Sudden emergence of a Neisseria gonorrhoeae clade with reduced susceptibility to extended-spectrum cephalosporins, Norway

Neisseria gonorrhoeae Population Genomics: Use of the Gonococcal Core Genome to Improve Surveillance of Antimicrobial Resistance

(2020) Odile B Harrison et al.   JOURNAL OF INFECTIOUS DISEASES

Genomic epidemiology and population structure of Neisseria gonorrhoeae in Norway, 2016–2017

(2020) Kristian Alfsnes et al.   Microbial Genomics

A dynamic power-law sexual network model of gonorrhoea outbreaks

(2019) Lilith K. Whittles et al.   PLoS Computational Biology

Fast and flexible bacterial genomic epidemiology with PopPUNK

(2019) John A. Lees et al.   GENOME RESEARCH

Rationale for a Neisseria gonorrhoeae Susceptible–only Interpretive Breakpoint for Azithromycin

(2019) Ellen N Kersh et al.   CLINICAL INFECTIOUS DISEASES

Models of gonorrhoea transmission from the mouth and saliva

(2019) Christopher K Fairley et al.   LANCET INFECTIOUS DISEASES

The impact of antimicrobials on gonococcal evolution

(2019) Leonor Sánchez-Busó et al.   Nature Microbiology

Extragenital Gonorrhoea in Men Who Have Sex with Men: A Retrospective Study in a STI Clinic in Lisbon, Portugal

(2018) Margarida Moura Valejo Coelho et al.   Acta Medica Portuguesa

Acquisition of virulence genes by a carrier strain gave rise to the ongoing epidemics of meningococcal disease in West Africa

(2018) Ola Brønstad Brynildsrud et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bayesian inference of ancestral dates on bacterial phylogenetic trees

(2018) Xavier Didelot et al.   NUCLEIC ACIDS RESEARCH

Neisseria gonorrhoeae Sequence Typing for Antimicrobial Resistance, a Novel Antimicrobial Resistance Multilocus Typing Scheme for Tracking Global Dissemination of N. gonorrhoeae Strains

(2017) W. Demczuk et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Genomic infectious disease epidemiology in partially sampled and ongoing outbreaks

(2017) Xavier Didelot et al.   MOLECULAR BIOLOGY AND EVOLUTION

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

(2017) Ryan R. Wick et al.   PLoS Computational Biology

Antimicrobial resistance in Neisseria gonorrhoeae: Global surveillance and a call for international collaborative action

(2017) Teodora Wi et al.   PLOS MEDICINE

Whole-genome sequencing to determine transmission of Neisseria gonorrhoeae : an observational study

(2016) Dilrini De Silva et al.   LANCET INFECTIOUS DISEASES

Current and future antimicrobial treatment of gonorrhoea – the rapidly evolving Neisseria gonorrhoeae continues to challenge

(2015) Magnus Unemo   BMC INFECTIOUS DISEASES

Genomic epidemiology of Neisseria gonorrhoeae with reduced susceptibility to cefixime in the USA: a retrospective observational study

(2014) Yonatan H Grad et al.   LANCET INFECTIOUS DISEASES

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

(2014) Nicholas J. Croucher et al.   NUCLEIC ACIDS RESEARCH

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Analysis of mutations in multiple loci of Neisseria gonorrhoeae isolates reveals effects of PIB, PBP2 and MtrR on reduced susceptibility to ceftriaxone

(2011) M. Liao et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

phytools: an R package for phylogenetic comparative biology (and other things)

(2011) Liam J. Revell   Methods in Ecology and Evolution

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY