Ixodes scapularis microbiome correlates with life stage, not the presence of human pathogens, in ticks submitted for diagnostic testing

Critical Relevance of Stochastic Effects on Low-Bacterial-Biomass 16S rRNA Gene Analysis

(2020) John R. Erb-Downward et al.   mBio

Potential effects of blood meal host on bacterial community composition in Ixodes scapularis nymphs

(2019) William J. Landesman et al.   Ticks and Tick-Borne Diseases

Surface sterilization methods impact measures of internal microbial diversity in ticks

(2019) Florian Binetruy et al.   Parasites & Vectors

Bacterial microbiomes of Ixodes scapularis ticks collected from Massachusetts and Texas, USA

(2019) Santosh Thapa et al.   BMC MICROBIOLOGY

Drivers and patterns of microbial community assembly in a Lyme disease vector

(2019) Lisa I. Couper et al.   Ecology and Evolution

Cross-kingdom analysis of nymphal-stage Ixodes scapularis microbial communities in relation to Borrelia burgdorferi infection and load

(2019) William J Landesman et al.   FEMS MICROBIOLOGY ECOLOGY

Ixodes scapularis does not harbor a stable midgut microbiome

(2018) Benjamin D. Ross et al.   ISME Journal

Recognizing the reagent microbiome

(2018) Marcus C. de Goffau et al.   Nature Microbiology

Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data

(2018) Nicole M. Davis et al.   Microbiome

Gut microbiota: Role in pathogen colonization, immune responses, and inflammatory disease

(2017) Joseph M. Pickard et al.   IMMUNOLOGICAL REVIEWS

Microbial control of arthropod-borne disease

(2017) Miguel A Saldaña et al.   MEMORIAS DO INSTITUTO OSWALDO CRUZ

Evolutionary changes in symbiont community structure in ticks

(2017) Olivier Duron et al.   MOLECULAR ECOLOGY

Vertical vs. horizontal transmission of the microbiome in a key disease vector, Ixodes pacificus

(2017) Jessica Y. Kwan et al.   MOLECULAR ECOLOGY

Pathogen-mediated manipulation of arthropod microbiota to promote infection

(2017) Nabil M. Abraham et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Tick Microbiome: Why Non-pathogenic Microorganisms Matter in Tick Biology and Pathogen Transmission

(2017) Sarah I. Bonnet et al.   Frontiers in Cellular and Infection Microbiology

Evolutionary Biology Needs Wild Microbiomes

(2017) Sarah M. Hird   Frontiers in Microbiology

Expanding Range of Amblyomma americanum and Simultaneous Changes in the Epidemiology of Spotted Fever Group Rickettsiosis in the United States

(2016) F. Scott Dahlgren et al.   AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE

Microbiome changes through ontogeny of a tick pathogen vector

(2016) Christine P. Zolnik et al.   MOLECULAR ECOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Variation in the Microbiota of Ixodes Ticks with Regard to Geography, Species, and Sex

(2015) Will Van Treuren et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

DECIPHER: harnessing local sequence context to improve protein multiple sequence alignment

(2015) Erik S. Wright   BMC BIOINFORMATICS

Investigation of tick-borne bacteria (Rickettsia spp., Anaplasma spp., Ehrlichia spp. and Borrelia spp.) in ticks collected from Andean tapirs, cattle and vegetation from a protected area in Ecuador

(2015) Cristina Pesquera et al.   Parasites & Vectors

Tick microbiome: the force within

(2015) Sukanya Narasimhan et al.   TRENDS IN PARASITOLOGY

Infection and Co-infection Rates of Anaplasma phagocytophilum Variants, Babesia spp., Borrelia burgdorferi, and the Rickettsial Endosymbiont in Ixodes scapularis (Acari: Ixodidae) from Sites in Indiana, Maine, Pennsylvania, and Wisconsin

(2015) F. E. Steiner et al.   JOURNAL OF MEDICAL ENTOMOLOGY

The Facultative Symbiont Rickettsia Protects an Invasive Whitefly against Entomopathogenic Pseudomonas syringae Strains

(2014) Tory A. Hendry et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

(2014) Susannah J Salter et al.   BMC BIOLOGY

Gut Microbiota of the Tick Vector Ixodes scapularis Modulate Colonization of the Lyme Disease Spirochete

(2014) Sukanya Narasimhan et al.   Cell Host & Microbe

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Protection against a fungal pathogen conferred by the aphid facultative endosymbiontsRickettsiaandSpiroplasmais expressed in multiple host genotypes and species and is not influenced by co-infection with another symbiont

(2013) P. Łukasik et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Endosymbiosis

(2012) Jennifer J. Wernegreen   CURRENT BIOLOGY

The arthropod, but not the vertebrate host or its environment, dictates bacterial community composition of fleas and ticks

(2012) Hadas Hawlena et al.   ISME Journal

Genome Reduction and Co-evolution between the Primary and Secondary Bacterial Symbionts of Psyllids

(2012) Daniel B. Sloan et al.   MOLECULAR BIOLOGY AND EVOLUTION

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Bacterial symbionts in insects or the story of communities affecting communities

(2011) J. Ferrari et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Metagenomic Profile of the Bacterial Communities Associated with Ixodes ricinus Ticks

(2011) Giovanna Carpi et al.   PLoS One

The impact of endosymbionts on the evolution of host sex-determination mechanisms

(2011) Richard Cordaux et al.   TRENDS IN GENETICS

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

The Ecology and Evolution of Microbes that Manipulate Host Reproduction

(2009) Jan Engelstädter et al.   Annual Review of Ecology Evolution and Systematics

Facultative Symbionts in Aphids and the Horizontal Transfer of Ecologically Important Traits

(2009) Kerry M. Oliver et al.   Annual Review of Entomology

Genomics and Evolution of Heritable Bacterial Symbionts

(2008) Nancy A. Moran et al.   Annual Review of Genetics

Database indexing for production MegaBLAST searches

(2008) Aleksandr Morgulis et al.   BIOINFORMATICS

Microbial communities and interactions in the lone star tick,Amblyomma americanum

(2008) K. CLAY et al.   MOLECULAR ECOLOGY