The AP2/ERF Gene Family in Triticum durum: Genome-Wide Identification and Expression Analysis under Drought and Salinity Stresses

Comprehensive phylogenomic analysis of ERF genes in sorghum provides clues to the evolution of gene functions and redundancy among gene family members

(2020) Supriya Mathur et al.   3 Biotech

Genome-Wide Analysis of the DREB Subfamily in Saccharum spontaneum Reveals Their Functional Divergence During Cold and Drought Stresses

(2020) Xing Huang et al.   Frontiers in Genetics

Structural variation, functional differentiation and expression characteristics of the AP2/ERF gene family and its response to cold stress and methyl jasmonate in Panax ginseng C.A. Meyer

(2020) Jing Chen et al.   PLoS One

A Novel AP2/ERF Transcription Factor, OsRPH1, Negatively Regulates Plant Height in Rice

(2020) Ziming Ma et al.   Frontiers in Plant Science

Characterization of the AP2/ERF Transcription Factor Family and Expression Profiling of DREB Subfamily under Cold and Osmotic Stresses in Ammopiptanthus nanus

(2020) Shilin Cao et al.   Plants-Basel

Insights into the SAM Synthetase Gene Family and Its Roles in Tomato Seedlings under Abiotic Stresses and Hormone Treatments

(2020) Parviz Heidari et al.   Plants-Basel

Advances in AP2/ERF super-family transcription factors in plant

(2020) Kai Feng et al.   CRITICAL REVIEWS IN BIOTECHNOLOGY

An AP2/ERF Gene, HuERF1, from Pitaya (Hylocereus undatus) Positively Regulates Salt Tolerance

(2020) Yujie Qu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genome-wide AP2/ERF gene family analysis reveals the classification, structure, expression profiles and potential function in orchardgrass (Dactylis glomerata)

(2020) Lei Xu et al.   MOLECULAR BIOLOGY REPORTS

TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data

(2020) Chengjie Chen et al.   Molecular Plant

A Novel ERF Transcription Factor, ZmERF105, Positively Regulates Maize Resistance to Exserohilum turcicum

(2020) Zhenyuan Zang et al.   Frontiers in Plant Science

Connections Between Amino Acid Metabolisms in Plants: Lysine as an Example

(2020) Qingqing Yang et al.   Frontiers in Plant Science

Transcriptome-wide analysis of the AP2/ERF transcription factor gene family involved in the regulation of gypenoside biosynthesis in Gynostemma pentaphyllum

(2020) Shiqiang Xu et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Genome-wide identification and expression analysis of the ERF transcription factor family in pineapple (Ananas comosus (L.) Merr.)

(2020) Youmei Huang et al.   PeerJ

Transcriptome analysis reveals differentially expressed ERF transcription factors associated with salt response in cotton

(2019) Lu Long et al.   PLANT SCIENCE

PrankWeb: a web server for ligand binding site prediction and visualization

(2019) Lukas Jendele et al.   NUCLEIC ACIDS RESEARCH

The EMBL-EBI search and sequence analysis tools APIs in 2019

(2019) Fábio Madeira et al.   NUCLEIC ACIDS RESEARCH

Genome-Wide Identification and Expression Profiling of the ERF Gene Family in Medicago sativa L. Under Various Abiotic Stresses

(2019) Xiaoyu Jin et al.   DNA AND CELL BIOLOGY

Genome-wide characterization of the AP2/ERF gene family in radish (Raphanus sativus L.): Unveiling evolution and patterns in response to abiotic stresses

(2019) Bernard Kinuthia Karanja et al.   GENE

Mutually Regulated AP2/ERF Gene Clusters Modulate Biosynthesis of Specialized Metabolites in Plants

(2019) Priyanka Paul et al.   PLANT PHYSIOLOGY

CavityPlus: a web server for protein cavity detection with pharmacophore modelling, allosteric site identification and covalent ligand binding ability prediction

(2018) Youjun Xu et al.   NUCLEIC ACIDS RESEARCH

Genome-Wide Characterization of bHLH Genes in Grape and Analysis of their Potential Relevance to Abiotic Stress Tolerance and Secondary Metabolite Biosynthesis

(2018) Pengfei Wang et al.   Frontiers in Plant Science

The AP2/ERF transcription factor SmERF1L1 regulates the biosynthesis of tanshinones and phenolic acids in Salvia miltiorrhiza

(2018) Qiang Huang et al.   FOOD CHEMISTRY

DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets

(2017) Julio Rozas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Protein Binding Pocket Dynamics

(2016) Antonia Stank et al.   ACCOUNTS OF CHEMICAL RESEARCH

Genome-wide identification, phylogeny and expression analysis of AP2/ERF transcription factors family in Brachypodium distachyon

(2016) Licao Cui et al.   BMC GENOMICS

Small family, big impact: In silico analysis of DREB2 transcription factor family in rice

(2016) Venura Herath   COMPUTATIONAL BIOLOGY AND CHEMISTRY

ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novelcis-element

(2016) Hsing-Yu Chen et al.   NEW PHYTOLOGIST

3Drefine: an interactive web server for efficient protein structure refinement

(2016) Debswapna Bhattacharya et al.   NUCLEIC ACIDS RESEARCH

PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants

(2016) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

Synergistic Activation ofRD29AVia Integration of Salinity Stress and Abscisic Acid inArabidopsis thaliana

(2016) Sang Y. Lee et al.   PLANT AND CELL PHYSIOLOGY

Genome-Wide Analysis of the AP2/ERF Superfamily Genes and their Responses to Abiotic Stress in Medicago truncatula

(2016) Yongjun Shu et al.   Frontiers in Plant Science

Expansion and stress responses of AP2/EREBP superfamily in Brachypodium Distachyon

(2016) Lihong Chen et al.   Scientific Reports

The ERF transcription factor family in cassava: genome-wide characterization and expression analyses against drought stress

(2016) Wei Fan et al.   Scientific Reports

The I-TASSER Suite: protein structure and function prediction

(2015) Jianyi Yang et al.   NATURE METHODS

Genome-wide analysis of AP2/ERF family genes from Lotus corniculatus shows LcERF054 enhances salt tolerance

(2014) Zhan-Min Sun et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

C2H2 type of zinc finger transcription factors in foxtail millet define response to abiotic stresses

(2014) Mehanathan Muthamilarasan et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Isolation and molecular characterization of ERF1, an ethylene response factor gene from durum wheat (Triticum turgidum L. subsp. durum), potentially involved in salt-stress responses

(2014) Emna Makhloufi et al.   JOURNAL OF EXPERIMENTAL BOTANY

Induced over-expression of AtDREB2A CA improves drought tolerance in sugarcane

(2014) Rafaela Ribeiro Reis et al.   PLANT SCIENCE

Genome-Wide Investigation and Expression Profiling of AP2/ERF Transcription Factor Superfamily in Foxtail Millet (Setaria italica L.)

(2014) Charu Lata et al.   PLoS One

Roles for jasmonate- and ethylene-induced transcription factors in the ability of Arabidopsis to respond differentially to damage caused by two insect herbivores

(2014) Erin M. Rehrig et al.   Frontiers in Plant Science

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Jasmonate Regulates the INDUCER OF CBF EXPRESSION-C-REPEAT BINDING FACTOR/DRE BINDING FACTOR1 Cascade and Freezing Tolerance in Arabidopsis

(2013) Y. Hu et al.   PLANT CELL

Comprehensive Genomic Analysis and Expression Profiling of Phospholipase C Gene Family during Abiotic Stresses and Development in Rice

(2013) Amarjeet Singh et al.   PLoS One

Glutathione and tryptophan metabolism are required forArabidopsisimmunity during the hypersensitive response to hemibiotrophs

(2013) Kei Hiruma et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Amino acid composition of proteins reduces deleterious impact of mutations

(2013) Sahand Hormoz   Scientific Reports

Cys2His2 zinc finger protein family: Classification, functions, and major members

(2012) S. V. Razin et al.   BIOCHEMISTRY-MOSCOW

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

The EDLL motif: a potent plant transcriptional activation domain from AP2/ERF transcription factors

(2012) Shiv B. Tiwari et al.   PLANT JOURNAL

Variability and expression profile of the DRF1 gene in four cultivars of durum wheat and one triticale under moderate water stress conditions

(2012) Arianna Latini et al.   PLANTA

AP2/ERF family transcription factors in plant abiotic stress responses

(2011) Junya Mizoi et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Role of DREBs in regulation of abiotic stress responses in plants

(2011) C. Lata et al.   JOURNAL OF EXPERIMENTAL BOTANY

Arabidopsis RGLG2, Functioning as a RING E3 Ligase, Interacts with AtERF53 and Negatively Regulates the Plant Drought Stress Response

(2011) M.-C. Cheng et al.   PLANT PHYSIOLOGY

Involvement of plant C2H2-type zinc finger transcription factors in stress responses

(2011) Agnieszka Kiełbowicz-Matuk   PLANT SCIENCE

Ligand binding to protein-binding pockets with wet and dry regions

(2011) L. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The CRF domain defines Cytokinin Response Factor proteins in plants

(2010) Aaron M Rashotte et al.   BMC PLANT BIOLOGY

Discovery and expression profile analysis of AP2/ERF family genes from Triticum aestivum

(2010) Jing Zhuang et al.   MOLECULAR BIOLOGY REPORTS

Gene Structures, Classification and Expression Models of the AP2/EREBP Transcription Factor Family in Rice

(2010) Akhter Most Sharoni et al.   PLANT AND CELL PHYSIOLOGY

Improvement of stress tolerance of wheat and barley by modulation of expression of DREB/CBF factors

(2010) Sarah Morran et al.   PLANT BIOTECHNOLOGY JOURNAL

AP2/EREBP transcription factors are part of gene regulatory networks and integrate metabolic, hormonal and environmental signals in stress acclimation and retrograde signalling

(2010) Karl-Josef Dietz et al.   PROTOPLASMA

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

A Novel Group of Transcriptional Repressors in Arabidopsis

(2009) Miho Ikeda et al.   PLANT AND CELL PHYSIOLOGY

Cell Polarity Signaling inArabidopsis

(2008) Zhenbiao Yang   Annual Review of Cell and Developmental Biology

Phylogeny, gene structures, and expression patterns of the ERF gene family in soybean (Glycine max L.)

(2008) Gaiyun Zhang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway

(2008) S. Taketa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA