Genomic and Functional Characterization of Enterococcus faecalis Isolates Recovered From the International Space Station and Their Potential for Pathogenicity

Off Earth Identification of Bacterial Populations Using 16S rDNA Nanopore Sequencing

(2020) Aaron S. Burton et al.   Genes

Pangenomic Approach To Understanding Microbial Adaptations within a Model Built Environment, the International Space Station, Relative to Human Hosts and Soil

(2019) Ryan A. Blaustein et al.   mSystems

Genomic Characterization and Virulence Potential of Two Fusarium oxysporum Isolates Cultured from the International Space Station

(2019) Camilla Urbaniak et al.   mSystems

Biofilm Forming Antibiotic Resistant Gram-Positive Pathogens Isolated From Surfaces on the International Space Station

(2019) Lydia-Yasmin Sobisch et al.   Frontiers in Microbiology

Herpes Virus Reactivation in Astronauts During Spaceflight and Its Application on Earth

(2019) Bridgette V. Rooney et al.   Frontiers in Microbiology

Clinical metagenomics

(2019) Charles Y. Chiu et al.   NATURE REVIEWS GENETICS

Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid

(2019) Steve Miller et al.   GENOME RESEARCH

Impact of antibiotic treatment and host innate immune pressure on enterococcal adaptation in the human bloodstream

(2019) Daria Van Tyne et al.   Science Translational Medicine

Abundance and survival of microbial aerosols in the troposphere and stratosphere

(2019) N. C. Bryan et al.   ISME Journal

Pathogenicity of Enterococci

(2019) Elizabeth Fiore et al.   Microbiology Spectrum

Space Station conditions are selective but do not alter microbial characteristics relevant to human health

(2019) Maximilian Mora et al.   Nature Communications

Rapid Detection of Genetic Engineering, Structural Variation, and Antimicrobial Resistance Markers in Bacterial Biothreat Pathogens by Nanopore Sequencing

(2019) Amy S. Gargis et al.   Scientific Reports

NanoPack: visualizing and processing long-read sequencing data

(2018) Wouter De Coster et al.   BIOINFORMATICS

Bacillus safensis FO-36b and Bacillus pumilus SAFR-032: a whole genome comparison of two spacecraft assembly facility isolates

(2018) Madhan R. Tirumalai et al.   BMC MICROBIOLOGY

CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins

(2018) David Couvin et al.   NUCLEIC ACIDS RESEARCH

Detection of antimicrobial resistance genes associated with the International Space Station environmental surfaces

(2018) C. Urbaniak et al.   Scientific Reports

Both live and dead Enterococci activate Caenorhabditis elegans host defense via immune and stress pathways

(2018) Grace J. Yuen et al.   Virulence

Real-time analysis of nanopore-based metagenomic sequencing from infected orthopaedic devices

(2018) Nicholas D Sanderson et al.   BMC GENOMICS

Multi-drug resistant Enterobacter bugandensis species isolated from the International Space Station and comparative genomic analyses with human pathogenic strains

(2018) Nitin K. Singh et al.   BMC MICROBIOLOGY

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

(2017) Ryan R. Wick et al.   PLoS Computational Biology

A microbial survey of the International Space Station (ISS)

(2017) Jenna M. Lang et al.   PeerJ

Nanopore DNA Sequencing and Genome Assembly on the International Space Station

(2017) Sarah L. Castro-Wallace et al.   Scientific Reports

Antimicrobial-Resistant Pathogens Associated With Healthcare-Associated Infections: Summary of Data Reported to the National Healthcare Safety Network at the Centers for Disease Control and Prevention, 2011–2014

(2016) Lindsey M. Weiner et al.   INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY

PHASTER: a better, faster version of the PHAST phage search tool

(2016) David Arndt et al.   NUCLEIC ACIDS RESEARCH

CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database

(2016) Baofeng Jia et al.   NUCLEIC ACIDS RESEARCH

OASIS 2: online application for survival analysis 2 with features for the analysis of maximal lifespan and healthspan in aging research

(2016) Seong Kyu Han et al.   Oncotarget

Four-year bacterial monitoring in the International Space Station—Japanese Experiment Module “Kibo” with culture-independent approach

(2016) Tomoaki Ichijo et al.   NPJ Microgravity

Roary: rapid large-scale prokaryote pan genome analysis

(2015) Andrew J. Page et al.   BIOINFORMATICS

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Alterations in adaptive immunity persist during long-duration spaceflight

(2015) Brian Crucian et al.   NPJ Microgravity

Transcriptomic and proteomic responses of Serratia marcescens to spaceflight conditions involve large-scale changes in metabolic pathways

(2014) Yajuan Wang et al.   ADVANCES IN SPACE RESEARCH

In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

(2014) Alessandra Carattoli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Real-Time Whole-Genome Sequencing for Routine Typing, Surveillance, and Outbreak Detection of Verotoxigenic Escherichia coli

(2014) K. G. Joensen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Enterococcus faecalis pCF10-encoded surface proteins PrgA, PrgB (aggregation substance) and PrgC contribute to plasmid transfer, biofilm formation and virulence

(2014) Minny Bhatty et al.   MOLECULAR MICROBIOLOGY

Ginger Extract Inhibits Biofilm Formation by Pseudomonas aeruginosa PA14

(2014) Han-Shin Kim et al.   PLoS One

Phenotypic, genomic, transcriptomic and proteomic changes in Bacillus cereus after a short-term space flight

(2013) Longxiang Su et al.   ADVANCES IN SPACE RESEARCH

Effects of Microgravity on the Virulence of Listeria monocytogenes, Enterococcus faecalis, Candida albicans, and Methicillin-Resistant Staphylococcus aureus

(2013) Timothy G. Hammond et al.   ASTROBIOLOGY

Comparison of Antibiotic Resistance, Biofilm Formation and Conjugative Transfer of Staphylococcus and Enterococcus Isolates from International Space Station and Antarctic Research Station Concordia

(2013) Katarzyna Schiwon et al.   MICROBIAL ECOLOGY

PathogenFinder - Distinguishing Friend from Foe Using Bacterial Whole Genome Sequence Data

(2013) Salvatore Cosentino et al.   PLoS One

Infection Prevention and Control During Prolonged Human Space Travel

(2012) L. A. Mermel   CLINICAL INFECTIOUS DISEASES

Immune System Dysregulation Occurs During Short Duration Spaceflight On Board the Space Shuttle

(2012) Brian Crucian et al.   JOURNAL OF CLINICAL IMMUNOLOGY

Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria

(2012) M. V. Larsen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Genomic variation landscape of the human gut microbiome

(2012) Siegfried Schloissnig et al.   NATURE

Large scale variation in Enterococcus faecalis illustrated by the genome analysis of strain OG1RF

(2008) Agathe Bourgogne et al.   GENOME BIOLOGY