Effects of Chemical and Mechanical Lysis on Microbial DNA Yield, Integrity, and Downstream Amplicon Sequencing of Rumen Bacteria and Protozoa

The Impact of DNA Extraction Methods on Stool Bacterial and Fungal Microbiota Community Recovery

(2019) Kristýna Fiedorová et al.   Frontiers in Microbiology

An alternative DNA extraction method for detection of Blastocystis spp. in human fecal samples

(2018) Djursun Karasartova et al.   EXPERIMENTAL PARASITOLOGY

Short communication: Variability in fermentation end-products and methanogen communities in different rumen sites of dairy cows

(2018) ZhiYuan Ma et al.   JOURNAL OF DAIRY SCIENCE

The Effect of DNA Extraction Methods on Observed Microbial Communities from Fibrous and Liquid Rumen Fractions of Dairy Cows

(2018) Jueeli D. Vaidya et al.   Frontiers in Microbiology

The Madness of Microbiome: Attempting To Find Consensus “Best Practice” for 16S Microbiome Studies

(2018) Jolinda Pollock et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys

(2015) William Walters et al.   mSystems

Systematic Design of 18S rRNA Gene Primers for Determining Eukaryotic Diversity in Microbial Consortia

(2014) Luisa W. Hugerth et al.   PLoS One

Effect of DNA Extraction Methods and Sampling Techniques on the Apparent Structure of Cow and Sheep Rumen Microbial Communities

(2013) Gemma Henderson et al.   PLoS One

Biases during DNA extraction of activated sludge samples revealed by high throughput sequencing

(2012) Feng Guo et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: Effective recovery of bacterial and archaeal DNA using mechanical cell lysis

(2010) Anne Salonen et al.   JOURNAL OF MICROBIOLOGICAL METHODS

High-Yield and Phylogenetically Robust Methods of DNA Recovery for Analysis of Microbial Biofilms Adherent to Plant Biomass in the Herbivore Gut

(2010) Carly P. Rosewarne et al.   MICROBIAL ECOLOGY

NanoDrop Microvolume Quantitation of Nucleic Acids

(2010) Philippe Desjardins et al.   Jove-Journal of Visualized Experiments

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Improved detection of microbial DNA after bead-beating before DNA isolation

(2009) Richard de Boer et al.   JOURNAL OF MICROBIOLOGICAL METHODS