The latency-associated transcript locus of herpes simplex virus 1 is a virulence determinant in human skin

Integrative functional genomics decodes herpes simplex virus 1

(2020) Adam W. Whisnant et al.   Nature Communications

Gene-expression profiling of single cells from archival tissue with laser-capture microdissection and Smart-3SEQ

(2019) Joseph W Foley et al.   GENOME RESEARCH

Genetic and phenotypic intrastrain variation in herpes simplex virus type 1 Glasgow strain 17 syn+-derived viruses

(2019) Juliet Jones et al.   JOURNAL OF GENERAL VIROLOGY

Single-cell RNA-sequencing of herpes simplex virus 1-infected cells connects NRF2 activation to an antiviral program

(2019) Emanuel Wyler et al.   Nature Communications

Salmon provides fast and bias-aware quantification of transcript expression

(2017) Rob Patro et al.   NATURE METHODS

Worldwide circulation of HSV-2 × HSV-1 recombinant strains

(2017) David M. Koelle et al.   Scientific Reports

Long-Read Isoform Sequencing Reveals a Hidden Complexity of the Transcriptional Landscape of Herpes Simplex Virus Type 1

(2017) Dóra Tombácz et al.   Frontiers in Microbiology

The HSV-1 Latency-Associated Transcript Functions to Repress Latent Phase Lytic Gene Expression and Suppress Virus Reactivation from Latently Infected Neurons

(2016) Michael P. Nicoll et al.   PLoS Pathogens

Herpes Simplex Virus Suppresses Necroptosis in Human Cells

(2015) Hongyan Guo et al.   Cell Host & Microbe

Widespread disruption of host transcription termination in HSV-1 infection

(2015) Andrzej J. Rutkowski et al.   Nature Communications

Molecular mechanisms of varicella zoster virus pathogenesis

(2014) Leigh Zerboni et al.   NATURE REVIEWS MICROBIOLOGY

Patterns of accumulation of miRNAs encoded by herpes simplex virus during productive infection, latency, and on reactivation

(2014) Te Du et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An Inquiry into the Molecular Basis of HSV Latency and Reactivation

(2013) Bernard Roizman et al.   Annual Review of Microbiology

Transcription-factor occupancy at HOT regions quantitatively predicts RNA polymerase recruitment in five human cell lines

(2013) Joseph W Foley et al.   BMC GENOMICS

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Using Tablet for visual exploration of second-generation sequencing data

(2012) I. Milne et al.   BRIEFINGS IN BIOINFORMATICS

Herpes Simplex Virus 1 Tropism for Human Sensory Ganglion Neurons in the Severe Combined Immunodeficiency Mouse Model of Neuropathogenesis

(2012) L. Zerboni et al.   JOURNAL OF VIROLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Identification of herpes simplex virus type 1 proteins encoded within the first 1.5 kb of the latency-associated transcript

(2010) Gail Henderson et al.   JOURNAL OF NEUROVIROLOGY

Numerous Conserved and Divergent MicroRNAs Expressed by Herpes Simplex Viruses 1 and 2

(2010) I. Jurak et al.   JOURNAL OF VIROLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Identification of a novel herpes simplex virus type 1 transcript and protein (AL3) expressed during latency

(2009) T. Jaber et al.   JOURNAL OF GENERAL VIROLOGY

Herpes Simplex Virus Type 1 (HSV-1)-Induced Apoptosis in Human Dendritic Cells as a Result of Downregulation of Cellular FLICE-Inhibitory Protein and Reduced Expression of HSV-1 Antiapoptotic Latency-Associated Transcript Sequences

(2009) A. Kather et al.   JOURNAL OF VIROLOGY

Transcription of the Herpes Simplex Virus Latency-Associated Transcript Promotes the Formation of Facultative Heterochromatin on Lytic Promoters

(2009) A. R. Cliffe et al.   JOURNAL OF VIROLOGY

Analysis of Human Alphaherpesvirus MicroRNA Expression in Latently Infected Human Trigeminal Ganglia

(2009) J. L. Umbach et al.   JOURNAL OF VIROLOGY

De Novo Synthesis of VP16 Coordinates the Exit from HSV Latency In Vivo

(2009) Richard L. Thompson et al.   PLoS Pathogens

Identification of two small RNAs within the first 1.5-kb of the herpes simplex virus type 1–encoded latency-associated transcript

(2008) Weiping Peng et al.   JOURNAL OF NEUROVIROLOGY

MicroRNAs expressed by herpes simplex virus 1 during latent infection regulate viral mRNAs

(2008) Jennifer Lin Umbach et al.   NATURE