A mechanistic model of the BLADE platform predicts performance characteristics of 256 different synthetic DNA recombination circuits

Inducible Gene Switches with Memory in Human T Cells for Cellular Immunotherapy

(2019) Deboki Chakravarti et al.   ACS Synthetic Biology

High-performance chemical- and light-inducible recombinases in mammalian cells and mice

(2019) Benjamin H. Weinberg et al.   Nature Communications

Deterministic-Like Model Reduction for a Class of Multi-Scale Stochastic Differential Equations with Application to Biomolecular Systems

(2018) Narmada Herath et al.   IEEE TRANSACTIONS ON AUTOMATIC CONTROL

Mathematical model of a serine integrase-controlled toggle switch with a single input

(2018) Alexandra Pokhilko et al.   Journal of the Royal Society Interface

A Dynamic Model of Resource Allocation in Response to the Presence of a Synthetic Construct

(2018) Axel Nyström et al.   ACS Synthetic Biology

A simplified mathematical model of directional DNA site-specific recombination by serine integrases

(2017) Alexandra Pokhilko et al.   Journal of the Royal Society Interface

Large-scale design of robust genetic circuits with multiple inputs and outputs for mammalian cells

(2017) Benjamin H Weinberg et al.   NATURE BIOTECHNOLOGY

Modeling the architecture of the regulatory system controlling methylenomycin production in Streptomyces coelicolor

(2017) Jack E. Bowyer et al.   Journal of Biological Engineering

Mechanistic Modeling of a Rewritable Recombinase Addressable Data Module

(2016) Jack Bowyer et al.   IEEE Transactions on Biomedical Circuits and Systems

A population‐based temporal logic gate for timing and recording chemical events

(2016) Victoria Hsiao et al.   Molecular Systems Biology

Genetic circuit design automation

(2016) A. A. K. Nielsen et al.   SCIENCE

Simplified mechanistic models of gene regulation for analysis and design

(2015) Edward J. Hancock et al.   Journal of the Royal Society Interface

Memory and Combinatorial Logic Based on DNA Inversions: Dynamics and Evolutionary Stability

(2015) Jesus Fernandez-Rodriguez et al.   ACS Synthetic Biology

New Applications for Phage Integrases

(2014) Paul C.M. Fogg et al.   JOURNAL OF MOLECULAR BIOLOGY

Principles of genetic circuit design

(2014) Jennifer A N Brophy et al.   NATURE METHODS

Building Synthetic Memory

(2013) Mara C. Inniss et al.   CURRENT BIOLOGY

Genomic mining of prokaryotic repressors for orthogonal logic gates

(2013) Brynne C Stanton et al.   Nature Chemical Biology

Amplifying Genetic Logic Gates

(2013) J. Bonnet et al.   SCIENCE

Gated rotation mechanism of site-specific recombination by  C31 integrase

(2012) F. J. Olorunniji et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rewritable digital data storage in live cells via engineered control of recombination directionality

(2012) J. Bonnet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A phage protein that binds φC31 integrase to switch its directionality

(2011) Thanafez Khaleel et al.   MOLECULAR MICROBIOLOGY

Comparison of evolutionary algorithms in gene regulatory network model inference

(2010) Alina Sîrbu et al.   BMC BIOINFORMATICS

Making Cellular Memories

(2010) Devin R. Burrill et al.   CELL

Next-generation synthetic gene networks

(2009) Timothy K Lu et al.   NATURE BIOTECHNOLOGY

The second wave of synthetic biology: from modules to systems

(2009) Priscilla E. M. Purnick et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Synthetic Gene Networks That Count

(2009) A. E. Friedland et al.   SCIENCE

A novel site-specific recombination system derived from bacteriophage ϕMR11

(2008) Mohammad Rashel et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Two-step site selection for serine-integrase-mediated excision: DNA-directed integrase conformation and central dinucleotide proofreading

(2008) P. Ghosh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA