RTEL1 Regulates G4/R-Loops to Avert Replication-Transcription Collisions

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The regulation and functions of DNA and RNA G-quadruplexes

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RTEL1 suppresses G-quadruplex-associated R-loops at difficult-to-replicate loci in the human genome

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SLX4 interacts with RTEL1 to prevent transcription-mediated DNA replication perturbations

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Synthetic Lethality between DNA Polymerase Epsilon and RTEL1 in Metazoan DNA Replication

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Human RTEL1 associates with Poldip3 to facilitate responses to replication stress and R-loop resolution

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R-Loops Enhance Polycomb Repression at a Subset of Developmental Regulator Genes

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R-ChIP for genome-wide mapping of R-loops by using catalytically inactive RNASEH1

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Fork Cleavage-Religation Cycle and Active Transcription Mediate Replication Restart after Fork Stalling at Co-transcriptional R-Loops

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CDK phosphorylation of TRF2 controls t-loop dynamics during the cell cycle

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DNA damage and genome instability by G-quadruplex ligands are mediated by R loops in human cancer cells

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Functions of Replication Protein A as a Sensor of R Loops and a Regulator of RNaseH1

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Singularity: Scientific containers for mobility of compute

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MultiQC: summarize analysis results for multiple tools and samples in a single report

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PrimPol Is Required for Replicative Tolerance of G Quadruplexes in Vertebrate Cells

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deepTools2: a next generation web server for deep-sequencing data analysis

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Re-evaluation of G-quadruplex propensity with G4Hunter

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ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization

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TRF2 Recruits RTEL1 to Telomeres in S Phase to Promote T-Loop Unwinding

(2015) Grzegorz Sarek et al.   MOLECULAR CELL

The role of topoisomerase I in suppressing genome instability associated with a highly transcribed guanine-rich sequence is not restricted to preventing RNA:DNA hybrid accumulation

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Nucleotide Pool Depletion Induces G-Quadruplex-Dependent Perturbation of Gene Expression

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Determinants of G quadruplex-induced epigenetic instability in REV1-deficient cells

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R-loops induce repressive chromatin marks over mammalian gene terminators

(2014) Konstantina Skourti-Stathaki et al.   NATURE

RTEL1: functions of a disease-associated helicase

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RNaseH1 regulates TERRA-telomeric DNA hybrids and telomere maintenance in ALT tumour cells

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featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

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Identification of Early Replicating Fragile Sites that Contribute to Genome Instability

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Predicting the molecular complexity of sequencing libraries

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RTEL1 Is a Replisome-Associated Helicase That Promotes Telomere and Genome-Wide Replication

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STAR: ultrafast universal RNA-seq aligner

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RTEL1 Dismantles T Loops and Counteracts Telomeric G4-DNA to Maintain Telomere Integrity

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ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

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R-Loop Formation Is a Distinctive Characteristic of Unmethylated Human CpG Island Promoters

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BamTools: a C++ API and toolkit for analyzing and managing BAM files

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Collisions between Replication and Transcription Complexes Cause Common Fragile Site Instability at the Longest Human Genes

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Integrative genomics viewer

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FANCJ coordinates two pathways that maintain epigenetic stability at G-quadruplex DNA

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Epigenetic Instability due to Defective Replication of Structured DNA

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Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

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BioMart – biological queries made easy

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Mammalian Telomeres Resemble Fragile Sites and Require TRF1 for Efficient Replication

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RTEL1 Maintains Genomic Stability by Suppressing Homologous Recombination

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Model-based Analysis of ChIP-Seq (MACS)

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