Multi-task learning for the simultaneous reconstruction of the human and mouse gene regulatory networks

Multi-study inference of regulatory networks for more accurate models of gene regulation

(2019) Dayanne M. Castro et al.   PLoS Computational Biology

Identification of Hub Genes and Key Pathways Associated With Bipolar Disorder Based on Weighted Gene Co-expression Network Analysis

(2019) Yang Liu et al.   Frontiers in Physiology

Semi-supervised trees for multi-target regression

(2018) Jurica Levatić et al.   INFORMATION SCIENCES

The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces

(2017) Adrian M Altenhoff et al.   NUCLEIC ACIDS RESEARCH

Learning from Heterogeneous Data Sources: An Application in Spatial Proteomics

(2016) Lisa M. Breckels et al.   PLoS Computational Biology

ComiRNet: a web-based system for the analysis of miRNA-gene regulatory networks

(2015) Gianvito Pio et al.   BMC BIOINFORMATICS

Semi-Supervised Multi-View Learning for Gene Network Reconstruction

(2015) Michelangelo Ceci et al.   PLoS One

Integrating microRNA target predictions for the discovery of gene regulatory networks: a semi-supervised ensemble learning approach

(2014) Gianvito Pio et al.   BMC BIOINFORMATICS

On handling negative transfer and imbalanced distributions in multiple source transfer learning

(2014) Liang Ge et al.   Statistical Analysis and Data Mining

Dealing with spatial autocorrelation when learning predictive clustering trees

(2012) Daniela Stojanova et al.   Ecological Informatics

Wisdom of crowds for robust gene network inference

(2012) Daniel Marbach et al.   NATURE METHODS

Tree ensembles for predicting structured outputs

(2012) Dragi Kocev et al.   PATTERN RECOGNITION

Combating Negative Transfer From Predictive Distribution Differences

(2012) Chun-Wei Seah et al.   IEEE Transactions on Cybernetics

How to infer gene networks from expression profiles, revisited

(2011) C. A. Penfold et al.   Interface Focus

A Survey on Transfer Learning

(2009) Sinno Jialin Pan et al.   IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING

Universal protein-binding microarrays for the comprehensive characterization of the DNA-binding specificities of transcription factors

(2009) Michael F Berger et al.   Nature Protocols

ChIP–seq: advantages and challenges of a maturing technology

(2009) Peter J. Park   NATURE REVIEWS GENETICS

Gene regulatory network inference: Data integration in dynamic models—A review

(2008) Michael Hecker et al.   BIOSYSTEMS