Upper airway gene expression reveals suppressed immune responses to SARS-CoV-2 compared with other respiratory viruses

An interactive web-based dashboard to track COVID-19 in real time

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SARS-CoV-2 Viral Load in Upper Respiratory Specimens of Infected Patients

(2020) Lirong Zou et al.   NEW ENGLAND JOURNAL OF MEDICINE

Transmission of 2019-nCoV Infection from an Asymptomatic Contact in Germany

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Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance

(2020) Xianding Deng et al.   Nature Microbiology

Imbalanced Host Response to SARS-CoV-2 Drives Development of COVID-19

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SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues

(2020) Carly G.K. Ziegler et al.   CELL

Heightened Innate Immune Responses in the Respiratory Tract of COVID-19 Patients

(2020) Zhuo Zhou et al.   Cell Host & Microbe

Self-reported Olfactory and Taste Disorders in Patients With Severe Acute Respiratory Coronavirus 2 Infection: A Cross-sectional Study

(2020) Andrea Giacomelli et al.   CLINICAL INFECTIOUS DISEASES

Temporal profiles of viral load in posterior oropharyngeal saliva samples and serum antibody responses during infection by SARS-CoV-2: an observational cohort study

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Virological assessment of hospitalized patients with COVID-2019

(2020) Roman Wölfel et al.   NATURE

Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19

(2020) Mingfeng Liao et al.   NATURE MEDICINE

Temporal dynamics in viral shedding and transmissibility of COVID-19

(2020) Xi He et al.   NATURE MEDICINE

Asymptomatic Transmission, the Achilles’ Heel of Current Strategies to Control Covid-19

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Presymptomatic SARS-CoV-2 Infections and Transmission in a Skilled Nursing Facility

(2020) Melissa M. Arons et al.   NEW ENGLAND JOURNAL OF MEDICINE

Smell dysfunction: a biomarker for COVID‐19

(2020) Shima T. Moein et al.   International Forum of Allergy & Rhinology

Risk Factors Associated With Acute Respiratory Distress Syndrome and Death in Patients With Coronavirus Disease 2019 Pneumonia in Wuhan, China

(2020) Chaomin Wu et al.   JAMA Internal Medicine

Transmission onset distribution of COVID-19

(2020) June Young Chun et al.   INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES

Suppression of a SARS-CoV-2 outbreak in the Italian municipality of Vo’

(2020) Enrico Lavezzo et al.   NATURE

Immune complement and coagulation dysfunction in adverse outcomes of SARS-CoV-2 infection

(2020) Vijendra Ramlall et al.   NATURE MEDICINE

The implications of silent transmission for the control of COVID-19 outbreaks

(2020) Seyed M. Moghadas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tissue-specific and interferon-inducible expression of nonfunctional ACE2 through endogenous retroelement co-option

(2020) Kevin W. Ng et al.   NATURE GENETICS

Interferons and viruses induce a novel truncated ACE2 isoform and not the full-length SARS-CoV-2 receptor

(2020) Olusegun O. Onabajo et al.   NATURE GENETICS

Two distinct immunopathological profiles in autopsy lungs of COVID-19

(2020) Ronny Nienhold et al.   Nature Communications

Miniaturization and optimization of 384-well compatible RNA sequencing library preparation

(2019) Madeline Y. Mayday et al.   PLoS One

Metagenomic next-generation sequencing of samples from pediatric febrile illness in Tororo, Uganda

(2019) Akshaya Ramesh et al.   PLoS One

WDR74 participates in an early cleavage of the pre-rRNA processing pathway in cooperation with the nucleolar AAA-ATPase NVL2

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Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

eIF4A2 is a host factor required for efficient HIV-1 replication

(2018) Jerry Kwame Ndzinu et al.   MICROBES AND INFECTION

Integrating host response and unbiased microbe detection for lower respiratory tract infection diagnosis in critically ill adults

(2018) Charles Langelier et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

EIF4A2 interacts with the membrane protein of transmissible gastroenteritis coronavirus and plays a role in virus replication

(2018) Zhenhui Song et al.   RESEARCH IN VETERINARY SCIENCE

Evaluation of the External RNA Controls Consortium (ERCC) reference material using a modified Latin square design

(2016) P. Scott Pine et al.   BMC BIOTECHNOLOGY

Near-optimal probabilistic RNA-seq quantification

(2016) Nicolas L Bray et al.   NATURE BIOTECHNOLOGY

Host gene expression classifiers diagnose acute respiratory illness etiology

(2016) Ephraim L. Tsalik et al.   Science Translational Medicine

Robust enumeration of cell subsets from tissue expression profiles

(2015) Aaron M Newman et al.   NATURE METHODS

limma powers differential expression analyses for RNA-sequencing and microarray studies

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The Reactome pathway knowledgebase

(2013) David Croft et al.   NUCLEIC ACIDS RESEARCH

FAM83A confers EGFR-TKI resistance in breast cancer cells and in mice

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The NLRP3 inflammasome in health and disease: the good, the bad and the ugly

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Sharpening Wald-type inference in robust regression for small samples

(2011) Manuel Koller et al.   COMPUTATIONAL STATISTICS & DATA ANALYSIS

Understanding the mechanism of IL-1β secretion

(2011) Gloria Lopez-Castejon et al.   CYTOKINE & GROWTH FACTOR REVIEWS

Temporal Dynamics of Host Molecular Responses Differentiate Symptomatic and Asymptomatic Influenza A Infection

(2011) Yongsheng Huang et al.   PLoS Genetics

A robust coefficient of determination for regression

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