Dinucleosome specificity and allosteric switch of the ISW1a ATP-dependent chromatin remodeler in transcription regulation
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Title
Dinucleosome specificity and allosteric switch of the ISW1a ATP-dependent chromatin remodeler in transcription regulation
Authors
Keywords
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Journal
Nature Communications
Volume 11, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-11-20
DOI
10.1038/s41467-020-19700-1
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Note: Only part of the references are listed.- Structures of the ISWI–nucleosome complex reveal a conserved mechanism of chromatin remodeling
- (2019) Lijuan Yan et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Histone Octamer Structure Is Altered Early in ISW2 ATP-Dependent Nucleosome Remodeling
- (2019) Arjan Hada et al. Cell Reports
- A basic motif anchoring ISWI to nucleosome acidic patch regulates nucleosome spacing
- (2019) Hai T. Dao et al. Nature Chemical Biology
- The nucleosomal acidic patch relieves auto-inhibition by the ISWI remodeler SNF2h
- (2018) Nathan Gamarra et al. eLife
- ISWI chromatin remodellers sense nucleosome modifications to determine substrate preference
- (2017) Geoffrey P. Dann et al. NATURE
- Genomic Nucleosome Organization Reconstituted with Pure Proteins
- (2016) Nils Krietenstein et al. CELL
- deepTools2: a next generation web server for deep-sequencing data analysis
- (2016) Fidel Ramírez et al. NUCLEIC ACIDS RESEARCH
- Histone Acetylation near the Nucleosome Dyad Axis Enhances Nucleosome Disassembly by RSC and SWI/SNF
- (2015) Nilanjana Chatterjee et al. MOLECULAR AND CELLULAR BIOLOGY
- A Nucleotide-Driven Switch Regulates Flanking DNA Length Sensing by a Dimeric Chromatin Remodeler
- (2015) John D. Leonard et al. MOLECULAR CELL
- limma powers differential expression analyses for RNA-sequencing and microarray studies
- (2015) Matthew E. Ritchie et al. NUCLEIC ACIDS RESEARCH
- A simple method for generating high-resolution maps of genome-wide protein binding
- (2015) Peter J Skene et al. eLife
- HTSeq--a Python framework to work with high-throughput sequencing data
- (2014) S. Anders et al. BIOINFORMATICS
- Nucleosome-free Region Dominates Histone Acetylation in Targeting SWR1 to Promoters for H2A.Z Replacement
- (2013) Anand Ranjan et al. CELL
- Nucleosome mobilization by ISW2 requires the concerted action of the ATPase and SLIDE domains
- (2013) Swetansu K Hota et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- ISWI and CHD Chromatin Remodelers Bind Promoters but Act in Gene Bodies
- (2013) Gabriel E. Zentner et al. PLoS Genetics
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- Genome-wide Nucleosome Specificity and Directionality of Chromatin Remodelers
- (2012) Kuangyu Yen et al. CELL
- Histone H3 Lysine 36 Methylation Targets the Isw1b Remodeling Complex to Chromatin
- (2012) V. E. Maltby et al. MOLECULAR AND CELLULAR BIOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Chromatin remodelers Isw1 and Chd1 maintain chromatin structure during transcription by preventing histone exchange
- (2012) Michaela Smolle et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
- (2012) Davis J. McCarthy et al. NUCLEIC ACIDS RESEARCH
- In Vivo Effects of Histone H3 Depletion on Nucleosome Occupancy and Position in Saccharomyces cerevisiae
- (2012) Andrea J. Gossett et al. PLoS Genetics
- Widespread remodeling of mid-coding sequence nucleosomes by Isw1
- (2012) Itay Tirosh et al. GENOME BIOLOGY
- Histone Variant H2A.Z and RNA Polymerase II Transcription Elongation
- (2011) M. S. Santisteban et al. MOLECULAR AND CELLULAR BIOLOGY
- Structure and mechanism of the chromatin remodelling factor ISW1a
- (2011) Kazuhiro Yamada et al. NATURE
- Structure and nucleosome interaction of the yeast NuA4 and Piccolo–NuA4 histone acetyltransferase complexes
- (2011) Johnathan R Chittuluru et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Histone H3 tail acetylation modulates ATP-dependent remodeling through multiple mechanisms
- (2011) Nilanjana Chatterjee et al. NUCLEIC ACIDS RESEARCH
- NuA4-dependent Acetylation of Nucleosomal Histones H4 and H2A Directly Stimulates Incorporation of H2A.Z by the SWR1 Complex
- (2010) Mohammed Altaf et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- SWI/SNF Has Intrinsic Nucleosome Disassembly Activity that Is Dependent on Adjacent Nucleosomes
- (2010) Mekonnen Lemma Dechassa et al. MOLECULAR CELL
- Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
- (2010) Jeremy Goecks et al. GENOME BIOLOGY
- NuA4 and SWR1-C: two chromatin-modifying complexes with overlapping functions and componentsThis paper is one of a selection of papers published in this Special Issue, entitled 30th Annual International Asilomar Chromatin and Chromosomes Conference, and has undergone the Journal's usual peer review process.
- (2009) Phoebe Y.T. Lu et al. Biochemistry and Cell Biology
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists
- (2009) Eran Eden et al. BMC BIOINFORMATICS
- Chromatin Remodeling by Imitation Switch (ISWI) Class ATP-dependent Remodelers Is Stimulated by Histone Variant H2A.Z
- (2009) Joseph A. Goldman et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- The chromatin remodeller ACF acts as a dimeric motor to space nucleosomes
- (2009) Lisa R. Racki et al. NATURE
- GeneTrack--a genomic data processing and visualization framework
- (2008) I. Albert et al. BIOINFORMATICS
- BioVenn – a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams
- (2008) Tim Hulsen et al. BMC GENOMICS
- Architecture of the SWI/SNF-Nucleosome Complex
- (2008) M. L. Dechassa et al. MOLECULAR AND CELLULAR BIOLOGY
- The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing
- (2008) U. Nagalakshmi et al. SCIENCE
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
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