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Title
Transcription shapes genome-wide histone acetylation patterns
Authors
Keywords
-
Journal
Nature Communications
Volume 12, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2021-01-11
DOI
10.1038/s41467-020-20543-z
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- (2017) Carol C.L. Chen et al. GENOME RESEARCH
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- (2017) Răzvan V. Chereji et al. MOLECULAR CELL
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- (2014) Wenxiu Ma et al. Nature Protocols
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- (2012) Timothy L. Bailey et al. NUCLEIC ACIDS RESEARCH
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