The RNA Architecture of the SARS-CoV-2 3′-Untranslated Region

A new coronavirus associated with human respiratory disease in China

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The Architecture of SARS-CoV-2 Transcriptome

(2020) Dongwan Kim et al.   CELL

An Infectious cDNA Clone of SARS-CoV-2

(2020) Xuping Xie et al.   Cell Host & Microbe

Determination of RNA structural diversity and its role in HIV-1 RNA splicing

(2020) Phillip J. Tomezsko et al.   NATURE

RNA genome conservation and secondary structure in SARS-CoV-2 and SARS-related viruses: a first look

(2020) Ramya Rangan et al.   RNA

Coding potential and sequence conservation of SARS-CoV-2 and related animal viruses

(2020) Rachele Cagliani et al.   INFECTION GENETICS AND EVOLUTION

Secondary structure of the SARS-CoV-2 5’-UTR

(2020) Zhichao Miao et al.   RNA Biology

The Short- and Long-Range RNA-RNA Interactome of SARS-CoV-2

(2020) Omer Ziv et al.   MOLECULAR CELL

Human Coronavirus: Host-Pathogen Interaction

(2019) To Sing Fung et al.   Annual Review of Microbiology

High-throughput screening for negative-stranded hemorrhagic fever viruses using reverse genetics

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RNA base-pairing complexity in living cells visualized by correlated chemical probing

(2019) Anthony M. Mustoe et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Visualization of RNA structure models within the Integrative Genomics Viewer

(2017) Steven Busan et al.   RNA

Accurate detection of chemical modifications in RNA by mutational profiling (MaP) with ShapeMapper 2

(2017) Steven Busan et al.   RNA

DMS-MaPseq for genome-wide or targeted RNA structure probing in vivo

(2016) Meghan Zubradt et al.   NATURE METHODS

Detection of RNA–Protein Interactions in Living Cells with SHAPE

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Selective 2′-hydroxyl acylation analyzed by primer extension and mutational profiling (SHAPE-MaP) for direct, versatile and accurate RNA structure analysis

(2015) Matthew J Smola et al.   Nature Protocols

The structure and functions of coronavirus genomic 3′ and 5′ ends

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Single-molecule correlated chemical probing of RNA

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Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo

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Accurate SHAPE-directed RNA secondary structure modeling, including pseudoknots

(2013) C. E. Hajdin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional analysis of the stem loop S3 and S4 structures in the coronavirus 3′UTR

(2013) Pinghua Liu et al.   VIROLOGY

A conserved RNA pseudoknot in a putative molecular switch domain of the 3'-untranslated region of coronaviruses is only marginally stable

(2011) S. N. Stammler et al.   RNA

Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries

(2011) Daniel Aird et al.   GENOME BIOLOGY

RNAstructure: software for RNA secondary structure prediction and analysis

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SARS-Coronavirus Replication/Transcription Complexes Are Membrane-Protected and Need a Host Factor for Activity In Vitro

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