Assembly of Satsuma mandarin mitochondrial genome and identification of cytoplasmic male sterility–specific ORFs in a somatic cybrid of pummelo

The miR399-CsUBC24 Module Regulates Reproductive Development and Male Fertility in Citrus

(2020) Rong Wang et al.   PLANT PHYSIOLOGY

Genome sequencing and CRISPR /Cas9 gene editing of an early flowering Mini‐Citrus ( Fortunella hindsii )

(2019) Chenqiao Zhu et al.   PLANT BIOTECHNOLOGY JOURNAL

Elucidating genomic patterns and recombination events in plant cybrid mitochondria

(2019) Laura E. Garcia et al.   PLANT MOLECULAR BIOLOGY

The Roles of Mitochondrion in Intergenomic Gene Transfer in Plants: A Source and a Pool

(2018) Nan Zhao et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The chimeric mitochondrial gene orf182 causes non-pollen-type abortion in Dongxiang cytoplasmic male-sterile rice

(2018) Hongwei Xie et al.   PLANT JOURNAL

Molecular Control of Male Fertility for Crop Hybrid Breeding

(2018) Yu-Jin Kim et al.   TRENDS IN PLANT SCIENCE

The complete mitochondrial genome of Citrus sinensis

(2018) Fengwen Yu et al.   Mitochondrial DNA Part B-Resources

QTL mapping of male sterility and transmission pattern in progeny of Satsuma mandarin

(2018) Shingo Goto et al.   PLoS One

The comparison of four mitochondrial genomes reveals cytoplasmic male sterility candidate genes in cotton

(2018) Shuangshuang Li et al.   BMC GENOMICS

Identification of a gene responsible for cytoplasmic male-sterility in onions (Allium cepa L.) using comparative analysis of mitochondrial genome sequences of two recently diverged cytoplasms

(2018) Bongju Kim et al.   THEORETICAL AND APPLIED GENETICS

Genomic analyses of primitive, wild and cultivated citrus provide insights into asexual reproduction

(2017) Xia Wang et al.   NATURE GENETICS

Comparative transcriptome analysis during early fruit development between three seedy citrus genotypes and their seedless mutants

(2017) Shujian Zhang et al.   Horticulture Research

High-throughput sequencing and degradome analysis reveal altered expression of miRNAs and their targets in a male-sterile cybrid pummelo (Citrus grandis)

(2016) Yan-Ni Fang et al.   BMC GENOMICS

Citrus breeding, genetics and genomics in Japan

(2016) Mitsuo Omura et al.   BREEDING SCIENCE

Multi-step formation, evolution and functionalization of new cytoplasmic male sterility genes in the plant mitochondrial genomes

(2016) Huiwu Tang et al.   CELL RESEARCH

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

Recovery of citrus cybrid plants with diverse mitochondrial and chloroplastic genome combinations by protoplast fusion followed by in vitro shoot, root, or embryo micrografting

(2016) P. Aleza et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Segregation and Heritability of Male Sterility in Populations Derived from Progeny of Satsuma Mandarin

(2016) Shingo Goto et al.   PLoS One

Evolutionary dynamics of the plastid inverted repeat: the effects of expansion, contraction, and loss on substitution rates

(2015) Andan Zhu et al.   NEW PHYTOLOGIST

High-density mapping suggests cytoplasmic male sterility with two restorer genes in almond × peach progenies

(2015) José Manuel Donoso et al.   Horticulture Research

iTRAQ-Based Quantitative Proteomics Analysis Revealed Alterations of Carbohydrate Metabolism Pathways and Mitochondrial Proteins in a Male Sterile Cybrid Pummelo

(2014) Bei-Bei Zheng et al.   JOURNAL OF PROTEOME RESEARCH

Homologous recombination and retention of a single form of most genes shape the highly chimeric mitochondrial genome of a cybrid plant

(2014) M. Virginia Sanchez-Puerta et al.   NEW PHYTOLOGIST

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Identification of differentially expressed microRNAs from a male sterile Ponkan mandarin (Citrus reticulata Blanco) and its fertile wild type by small RNA and degradome sequencing

(2014) Yan-Ni Fang et al.   Tree Genetics & Genomes

Male Sterility and Fertility Restoration in Crops

(2013) Letian Chen et al.   Annual Review of Plant Biology

Mitotype-specific sequences related to cytoplasmic male sterility in Oryza species

(2013) Hongwei Xie et al.   MOLECULAR BREEDING

A detrimental mitochondrial-nuclear interaction causes cytoplasmic male sterility in rice

(2013) Dangping Luo et al.   NATURE GENETICS

OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

(2013) Marc Lohse et al.   NUCLEIC ACIDS RESEARCH

Production and molecular characterization of diploid and tetraploid somatic cybrid plants between male sterile Satsuma mandarin and seedy sweet orange cultivars

(2013) Shi-Xin Xiao et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Somatic cybrid production via protoplast fusion for citrus improvement

(2013) Wen-Wu Guo et al.   SCIENTIA HORTICULTURAE

Unipro UGENE: a unified bioinformatics toolkit

(2012) Konstantin Okonechnikov et al.   BIOINFORMATICS

Complete sequence of heterogenous-composition mitochondrial genome (Brassica napus) and its exogenous source

(2012) Juan Wang et al.   BMC GENOMICS

A complete mitochondrial genome sequence of Ogura-type male-sterile cytoplasm and its comparative analysis with that of normal cytoplasm in radish (Raphanus sativus L.)

(2012) Yoshiyuki Tanaka et al.   BMC GENOMICS

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

The draft genome of sweet orange (Citrus sinensis)

(2012) Qiang Xu et al.   NATURE GENETICS

The mitochondrial genome of Malus domestica and the import-driven hypothesis of mitochondrial genome expansion in seed plants

(2012) Vadim V. Goremykin et al.   PLANT JOURNAL

Comparative Transcript Profiling of a Male Sterile Cybrid Pummelo and Its Fertile Type Revealed Altered Gene Expression Related to Flower Development

(2012) Bei-Bei Zheng et al.   PLoS One

Transcriptome map of plant mitochondria reveals islands of unexpected transcribed regions

(2011) Sota Fujii et al.   BMC GENOMICS

A male sterility-associated cytotoxic protein ORF288 in Brassica juncea causes aborted pollen development

(2011) Bing Jing et al.   JOURNAL OF EXPERIMENTAL BOTANY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Somatic hybridization for citrus rootstock breeding: an effective tool to solve some important issues of the Mediterranean citrus industry

(2011) Dominique Dambier et al.   PLANT CELL REPORTS

Insights into the Evolution of Mitochondrial Genome Size from Complete Sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae)

(2010) A. J. Alverson et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genic markers for wild abortive (WA) cytoplasm based male sterility and its fertility restoration in rice

(2010) Umakanta Ngangkham et al.   MOLECULAR BREEDING

Proteomic analysis of leaves from a diploid cybrid produced by protoplast fusion between Satsuma mandarin and pummelo

(2010) Lei Wang et al.   PLANT CELL TISSUE AND ORGAN CULTURE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Mitochondrial DNA of Vitis vinifera and the Issue of Rampant Horizontal Gene Transfer

(2008) V. V. Goremykin et al.   MOLECULAR BIOLOGY AND EVOLUTION

Angiosperm mitochondrial genomes and mutations

(2007) Tomohiko Kubo et al.   MITOCHONDRION