Characterization of a common progenitor pool of the epicardium and myocardium

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(2019) Blanca Pijuan-Sala et al.   NATURE

The emergent landscape of the mouse gut endoderm at single-cell resolution

(2019) Sonja Nowotschin et al.   NATURE

Single-cell analysis of cardiogenesis reveals basis for organ-level developmental defects

(2019) T. Yvanka de Soysa et al.   NATURE

Gene profiling of head mesoderm in early zebrafish development: insights into the evolution of cranial mesoderm

(2019) Huijia Wang et al.   EvoDevo

Single-Cell Transcriptomics Reveals Chemotaxis-Mediated Intraorgan Crosstalk During Cardiogenesis

(2019) Haiqing Xiong et al.   CIRCULATION RESEARCH

The First Heartbeat—Origin of Cardiac Contractile Activity

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The ontogeny, activation and function of the epicardium during heart development and regeneration

(2018) Filipa C. Simões et al.   DEVELOPMENT

Third-generationin situhybridization chain reaction: multiplexed, quantitative, sensitive, versatile, robust

(2018) Harry M. T. Choi et al.   DEVELOPMENT

Efficient generation of targeted large insertions by microinjection into two-cell-stage mouse embryos

(2018) Bin Gu et al.   NATURE BIOTECHNOLOGY

Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors

(2018) Laleh Haghverdi et al.   NATURE BIOTECHNOLOGY

Defining murine organogenesis at single-cell resolution reveals a role for the leukotriene pathway in regulating blood progenitor formation

(2018) Ximena Ibarra-Soria et al.   NATURE CELL BIOLOGY

The epicardium as a hub for heart regeneration

(2018) Jingli Cao et al.   Nature Reviews Cardiology

Defining the earliest step of cardiovascular lineage segregation by single-cell RNA-seq

(2018) Fabienne Lescroart et al.   SCIENCE

The deployment of cell lineages that form the mammalian heart

(2018) Sigolène M. Meilhac et al.   Nature Reviews Cardiology

In Toto Imaging and Reconstruction of Post-Implantation Mouse Development at the Single-Cell Level

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Complex heatmaps reveal patterns and correlations in multidimensional genomic data

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Transcriptomic Profiling Maps Anatomically Patterned Subpopulations among Single Embryonic Cardiac Cells

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Calcium handling precedes cardiac differentiation to initiate the first heartbeat

(2016) Richard CV Tyser et al.   eLife

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Diffusion maps for high-dimensional single-cell analysis of differentiation data

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Molecular Regulation of Cardiomyocyte Differentiation

(2015) S. L. Paige et al.   CIRCULATION RESEARCH

Computational assignment of cell-cycle stage from single-cell transcriptome data

(2015) Antonio Scialdone et al.   METHODS

Ensembl 2016

(2015) Andrew Yates et al.   NUCLEIC ACIDS RESEARCH

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Early lineage restriction in temporally distinct populations of Mesp1 progenitors during mammalian heart development

(2014) Fabienne Lescroart et al.   NATURE CELL BIOLOGY

Full-length RNA-seq from single cells using Smart-seq2

(2014) Simone Picelli et al.   Nature Protocols

Subpopulation of Proepicardial Cells Is Derived From the Somatic Mesoderm in the Chick Embryo

(2013) Jan Schlueter et al.   CIRCULATION RESEARCH

Nuclear double-fluorescent reporter for in vivo and ex vivo analyses of biological transitions in mouse nuclei

(2013) Justin R. Prigge et al.   MAMMALIAN GENOME

Accounting for technical noise in single-cell RNA-seq experiments

(2013) Philip Brennecke et al.   NATURE METHODS

Early Mesodermal Cues Assign Avian Cardiac Pacemaker Fate Potential in a Tertiary Heart Field

(2013) M. Bressan et al.   SCIENCE

Mab21l2 Is Essential for Embryonic Heart and Liver Development

(2012) Yohei Saito et al.   PLoS One

Fast and SNP-tolerant detection of complex variants and splicing in short reads

(2010) T. D. Wu et al.   BIOINFORMATICS

The sinus venosus progenitors separate and diversify from the first and second heart fields early in development

(2010) Mathilda T.M. Mommersteeg et al.   CARDIOVASCULAR RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS