Immature HIV-1 assembles from Gag dimers leaving partial hexamers at lattice edges as potential substrates for proteolytic maturation

Monitoring HIV-1 Assembly in Living Cells: Insights from Dynamic and Single Molecule Microscopy

(2019) Kaushik Inamdar et al.   Viruses-Basel

Maturation of retroviruses

(2019) Owen Pornillos et al.   Current Opinion in Virology

Roles of Gag-RNA interactions in HIV-1 virus assembly deciphered by single-molecule localization microscopy

(2018) Yantao Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Timing of ESCRT-III protein recruitment and membrane scission during HIV-1 assembly

(2018) Daniel S Johnson et al.   eLife

Inositol phosphates are assembly co-factors for HIV-1

(2018) Robert A. Dick et al.   NATURE

High-resolution structures of HIV-1 Gag cleavage mutants determine structural switch for virus maturation

(2018) Simone Mattei et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structure and architecture of immature and mature murine leukemia virus capsids

(2018) Kun Qu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

tICA-Metadynamics: Accelerating Metadynamics by Using Kinetically Selected Collective Variables

(2017) Mohammad M. Sultan et al.   Journal of Chemical Theory and Computation

Immature HIV-1 lattice assembly dynamics are regulated by scaffolding from nucleic acid and the plasma membrane

(2017) Alexander J. Pak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quenching protein dynamics interferes with HIV capsid maturation

(2017) Mingzhang Wang et al.   Nature Communications

CHARMM36m: an improved force field for folded and intrinsically disordered proteins

(2016) Jing Huang et al.   NATURE METHODS

An atomic model of HIV-1 capsid-SP1 reveals structures regulating assembly and maturation

(2016) Florian K. M. Schur et al.   SCIENCE

The structure and flexibility of conical HIV-1 capsids determined within intact virions

(2016) Simone Mattei et al.   SCIENCE

Crystal structure of an HIV assembly and maturation switch

(2016) Jonathan M Wagner et al.   eLife

Dimerization of the SP1 Region of HIV-1 Gag Induces a Helical Conformation and Association into Helical Bundles: Implications for Particle Assembly

(2015) Siddhartha A. K. Datta et al.   JOURNAL OF VIROLOGY

The Structure of Immature Virus-Like Rous Sarcoma Virus Gag Particles Reveals a Structural Role for the p10 Domain in Assembly

(2015) Florian K. M. Schur et al.   JOURNAL OF VIROLOGY

A Time-Independent Free Energy Estimator for Metadynamics

(2014) Pratyush Tiwary et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Structure of the immature HIV-1 capsid in intact virus particles at 8.8 Å resolution

(2014) Florian K. M. Schur et al.   NATURE

PLUMED 2: New feathers for an old bird

(2013) Gareth A. Tribello et al.   COMPUTER PHYSICS COMMUNICATIONS

HIV-1 Assembly, Budding, and Maturation

(2013) W. I. Sundquist et al.   Cold Spring Harbor Perspectives in Medicine

Context Surrounding Processing Sites Is Crucial in Determining Cleavage Rate of a Subset of Processing Sites in HIV-1 Gag and Gag-Pro-Pol Polyprotein Precursors by Viral Protease

(2012) Sook-Kyung Lee et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Choreography of HIV-1 Proteolytic Processing and Virion Assembly

(2012) Sook-Kyung Lee et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Dynamo: A flexible, user-friendly development tool for subtomogram averaging of cryo-EM data in high-performance computing environments

(2012) Daniel Castaño-Díez et al.   JOURNAL OF STRUCTURAL BIOLOGY

Structural, kinetic, and thermodynamic studies of specificity designed HIV-1 protease

(2012) Oscar Alvizo et al.   PROTEIN SCIENCE

Mechanisms of kinetic trapping in self-assembly and phase transformation

(2011) Michael F. Hagan et al.   JOURNAL OF CHEMICAL PHYSICS

Clustering and variance maps for cryo-electron tomography using wedge-masked differences

(2011) John M. Heumann et al.   JOURNAL OF STRUCTURAL BIOLOGY

PyTom: A python-based toolbox for localization of macromolecules in cryo-electron tomograms and subtomogram analysis

(2011) Thomas Hrabe et al.   JOURNAL OF STRUCTURAL BIOLOGY

Cryo Electron Tomography of Native HIV-1 Budding Sites

(2010) Lars-Anders Carlson et al.   PLoS Pathogens

Structure and assembly of immature HIV

(2009) J. A. G. Briggs et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Classification and 3D averaging with missing wedge correction in biological electron tomography☆

(2008) A. Bartesaghi et al.   JOURNAL OF STRUCTURAL BIOLOGY

Assembly Properties of Human Immunodeficiency Virus Type 1 Gag-Leucine Zipper Chimeras: Implications for Retrovirus Assembly

(2008) R. M. Crist et al.   JOURNAL OF VIROLOGY

Role of Reversibility in Viral Capsid Growth: A Paradigm for Self-Assembly

(2008) D. C. Rapaport   PHYSICAL REVIEW LETTERS

Well-Tempered Metadynamics: A Smoothly Converging and Tunable Free-Energy Method

(2008) Alessandro Barducci et al.   PHYSICAL REVIEW LETTERS

Classification of cryo-electron sub-tomograms using constrained correlation

(2007) Friedrich Förster et al.   JOURNAL OF STRUCTURAL BIOLOGY