An RNA pseudoknot is essential for standby-mediated translation of the tisB toxin mRNA in Escherichia coli

Translation inhibition from a distance: The small RNA SgrS silences a ribosomal protein S1‐dependent enhancer

(2020) Muhammad S. Azam et al.   MOLECULAR MICROBIOLOGY

Autogenous regulation in vivo of the rpmE gene encoding ribosomal protein L31 (bL31), a key component of the protein-protein intersubunit bridge B1b.

(2020) Leonid V Aseev et al.   RNA

Hfq‐dependent mRNA unfolding promotes sRNA‐based inhibition of translation

(2019) Mirthe Hoekzema et al.   EMBO JOURNAL

The ribosomal protein S1-dependent standby site in tisB mRNA consists of a single-stranded region and a 5′ structure element

(2019) Cédric Romilly et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial Persisters and Infection: Past, Present, and Progressing

(2019) Bridget Gollan et al.   Annual Review of Microbiology

Protein unties the pseudoknot: S1-mediated unfolding of RNA higher order structure

(2019) Paul E Lund et al.   NUCLEIC ACIDS RESEARCH

Unstructured 5′-tails act through ribosome standby to override inhibitory structure at ribosome binding sites

(2018) Maaike Sterk et al.   NUCLEIC ACIDS RESEARCH

Translation initiation in bacterial polysomes through ribosome loading on a standby site on a highly translated mRNA

(2018) Irena Andreeva et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Salmonella persisters undermine host immune defenses during antibiotic treatment

(2018) Daphne A. C. Stapels et al.   SCIENCE

Two regulatory RNA elements affect TisB-dependent depolarization and persister formation

(2017) Bork A. Berghoff et al.   MOLECULAR MICROBIOLOGY

RNA-sequence data normalization through in silico prediction of reference genes: the bacterial response to DNA damage as case study

(2017) Bork A. Berghoff et al.   BioData Mining

The 5΄ UTR of the type I toxin ZorO can both inhibit and enhance translation

(2016) Jia Wen et al.   NUCLEIC ACIDS RESEARCH

Selective 2′-hydroxyl acylation analyzed by primer extension and mutational profiling (SHAPE-MaP) for direct, versatile and accurate RNA structure analysis

(2015) Matthew J Smola et al.   Nature Protocols

Structure and function of pseudoknots involved in gene expression control

(2014) Alla Peselis et al.   Wiley Interdisciplinary Reviews-RNA

Translation Enhancer Improves the Ribosome Liberation from Translation Initiation

(2013) Shuntaro Takahashi et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

The ZorO-OrzO type I toxin–antitoxin locus: repression by the OrzO antitoxin

(2013) Jia Wen et al.   NUCLEIC ACIDS RESEARCH

Escherichia coli Ribosomal Protein S1 Unfolds Structured mRNAs Onto the Ribosome for Active Translation Initiation

(2013) Mélodie Duval et al.   PLOS BIOLOGY

Multiple activities of RNA-binding proteins S1 and Hfq

(2012) Eliane Hajnsdorf et al.   BIOCHIMIE

Ribosomal protein S1 unwinds double-stranded RNA in multiple steps

(2012) X. Qu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New type I toxin-antitoxin families from “wild” and laboratory strains ofE. coli

(2012) Elizabeth M. Fozo   RNA Biology

Ciprofloxacin Causes Persister Formation by Inducing the TisB toxin in Escherichia coli

(2010) Tobias Dörr et al.   PLOS BIOLOGY

PseudoViewer3: generating planar drawings of large-scale RNA structures with pseudoknots

(2009) Yanga Byun et al.   BIOINFORMATICS

Improved free energy parameters for RNA pseudoknotted secondary structure prediction

(2009) M. S. Andronescu et al.   RNA

A small SOS-induced toxin is targeted against the inner membrane in Escherichia coli

(2008) Cecilia Unoson et al.   MOLECULAR MICROBIOLOGY

Repression of small toxic protein synthesis by the Sib and OhsC small RNAs

(2008) Elizabeth M. Fozo et al.   MOLECULAR MICROBIOLOGY