Z-DNA-forming sites identified by ChIP-Seq are associated with actively transcribed regions in the human genome

Active promoters give rise to false positive ‘Phantom Peaks’ in ChIP-seq experiments

(2015) Dhawal Jain et al.   NUCLEIC ACIDS RESEARCH

NFκB and STAT3 synergistically activate the expression of FAT10, a gene counteracting the tumor suppressor p53

(2014) Yongwook Choi et al.   Molecular Oncology

Distinct and Predictive Histone Lysine Acetylation Patterns at Promoters, Enhancers, and Gene Bodies

(2014) Nisha Rajagopal et al.   G3-Genes Genomes Genetics

Impact of artifact removal on ChIP quality metrics in ChIP-seq and ChIP-exo data

(2014) Thomas S. Carroll et al.   Frontiers in Genetics

Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures

(2013) Catherine Naughton et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Transcription-dependent dynamic supercoiling is a short-range genomic force

(2013) Fedor Kouzine et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Nrf2 activation is associated with Z-DNA formation in the human HO-1 promoter

(2013) Atsushi Maruyama et al.   NUCLEIC ACIDS RESEARCH

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Functional elements demarcated by histone modifications in breast cancer cells

(2012) Moon Kyung Choe et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

(2012) S. G. Landt et al.   GENOME RESEARCH

SWI/SNF-mediated chromatin remodeling induces Z-DNA formation on a nucleosome

(2012) Niveen Mulholland et al.   Cell and Bioscience

Deep proteome and transcriptome mapping of a human cancer cell line

(2011) N. Nagaraj et al.   Molecular Systems Biology

Z-DNA-forming silencer in the first exon regulates human ADAM-12 gene expression

(2010) B. K. Ray et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Human genomic Z-DNA segments probed by the Zα domain of ADAR1

(2009) Heng Li et al.   NUCLEIC ACIDS RESEARCH

A Z-DNA sequence reduces slipped-strand structure formation in the myotonic dystrophy type 2 (CCTG){middle dot}(CAGG) repeat

(2009) S. F. Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mapping accessible chromatin regions using Sono-Seq

(2009) R. K. Auerbach et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA