A genomic view of food-related and probiotic Enterococcus strains

Comprehensive molecular, genomic and phenotypic analysis of a major clone of Enterococcus faecalis MLST ST40

(2015) Melanie Zischka et al.   BMC GENOMICS

Investigating the mobilome in clinically important lineages of Enterococcus faecium and Enterococcus faecalis

(2015) Theresa Mikalsen et al.   BMC GENOMICS

Occurrence of antilisterial structural bacteriocins genes in meat borne lactic acid bacteria

(2015) Cecilia Fontana et al.   FOOD CONTROL

An updated evolutionary classification of CRISPR–Cas systems

(2015) Kira S. Makarova et al.   NATURE REVIEWS MICROBIOLOGY

IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis: Figure 1.

(2015) Bhavjinder K. Dhillon et al.   NUCLEIC ACIDS RESEARCH

A biphasic epigenetic switch controls immunoevasion, virulence and niche adaptation in non-typeable Haemophilus influenzae

(2015) John M. Atack et al.   Nature Communications

Friend Turned Foe: Evolution of Enterococcal Virulence and Antibiotic Resistance

(2014) Daria Van Tyne et al.   Annual Review of Microbiology

Comparative Genomic and Morphological Analyses of Listeria Phages Isolated from Farm Environments

(2014) Thomas Denes et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Selection of potential probiotic Enterococcus faecium isolated from Portuguese fermented food

(2014) Joana Barbosa et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Functional genomics of lactic acid bacteria: from food to health

(2014) François P Douillard et al.   Microbial Cell Factories

ARG-ANNOT, a New Bioinformatic Tool To Discover Antibiotic Resistance Genes in Bacterial Genomes

(2013) Sushim Kumar Gupta et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Nonclinical and Clinical Enterococcus faecium Strains, but Not Enterococcus faecalis Strains, Have Distinct Structural and Functional Genomic Features

(2013) Eun Bae Kim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IslandViewer update: improved genomic island discovery and visualization

(2013) Bhavjinder K. Dhillon et al.   NUCLEIC ACIDS RESEARCH

BAGEL3: automated identification of genes encoding bacteriocins and (non-)bactericidal posttranslationally modified peptides

(2013) Auke J. van Heel et al.   NUCLEIC ACIDS RESEARCH

Unique core genomes of the bacterial family vibrionaceae: insights into niche adaptation and speciation

(2012) Tim Kahlke et al.   BMC GENOMICS

Comparative Genomics of Enterococci: Variation in Enterococcus faecalis, Clade Structure in E. faecium, and Defining Characteristics of E. gallinarum and E. casseliflavus

(2012) K. L. Palmer et al.   mBio

Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems

(2011) Kira S Makarova et al.   Biology Direct

Proteinortho: Detection of (Co-)orthologs in large-scale analysis

(2011) Marcus Lechner et al.   BMC BIOINFORMATICS

Phenotypic and Genotypic Characterization of Bacteriocins in Enterococcal Isolates of Different Sources

(2011) Gamze Başbülbül Özdemir et al.   INDIAN JOURNAL OF MICROBIOLOGY

Draft Genome Sequence of Enterococcus mundtii CRL1656

(2011) C. Magni et al.   JOURNAL OF BACTERIOLOGY

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

PHAST: A Fast Phage Search Tool

(2011) Y. Zhou et al.   NUCLEIC ACIDS RESEARCH

Aminoglycoside modifying enzymes

(2010) Maria S. Ramirez et al.   DRUG RESISTANCE UPDATES

Virulence genes, antibiotic resistance and plasmid profiles of Enterococcus faecalis and Enterococcus faecium from naturally fermented Turkish foods

(2010) S. Özmen Toğay et al.   JOURNAL OF APPLIED MICROBIOLOGY

IslandViewer: an integrated interface for computational identification and visualization of genomic islands

(2009) M. G. I. Langille et al.   BIOINFORMATICS

EDGAR: A software framework for the comparative analysis of prokaryotic genomes

(2009) Jochen Blom et al.   BMC BIOINFORMATICS

Antibiotic susceptibility of enterococci isolated from traditional fermented meat products

(2009) J. Barbosa et al.   FOOD MICROBIOLOGY

Genome Sequence and Comparative Genome Analysis of Lactobacillus casei: Insights into Their Niche-Associated Evolution

(2009) Hui Cai et al.   Genome Biology and Evolution

Multiple posttranscriptional regulatory mechanisms partner to control ethanolamine utilization in Enterococcus faecalis

(2009) K. A. Fox et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The dual role of bacteriocins as anti- and probiotics

(2008) O. Gillor et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Evaluation of genomic island predictors using a comparative genomics approach

(2008) Morgan GI Langille et al.   BMC BIOINFORMATICS

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Update on macrolide-lincosamide-streptogramin, ketolide, and oxazolidinone resistance genes

(2008) Marilyn C. Roberts   FEMS MICROBIOLOGY LETTERS

Functional and safety aspects of enterococci in dairy foods

(2008) Arun Bhardwaj et al.   INDIAN JOURNAL OF MICROBIOLOGY

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION