DeepCell Kiosk: scaling deep learning–enabled cellular image analysis with Kubernetes

Interoperable and scalable data analysis with microservices: Applications in Metabolomics

(2019) Payam Emami Khoonsari et al.   BIOINFORMATICS

ImJoy: an open-source computational platform for the deep learning era

(2019) Wei Ouyang et al.   NATURE METHODS

Analysis of the Human Protein Atlas Image Classification competition

(2019) Wei Ouyang et al.   NATURE METHODS

CellProfiler 3.0: Next-generation image processing for biology

(2018) Claire McQuin et al.   PLOS BIOLOGY

Container-based bioinformatics with Pachyderm

(2018) Jon Ander Novella et al.   BIOINFORMATICS

A Structured Tumor-Immune Microenvironment in Triple Negative Breast Cancer Revealed by Multiplexed Ion Beam Imaging

(2018) Leeat Keren et al.   CELL

CDeep3M—Plug-and-Play cloud-based deep learning for image segmentation

(2018) Matthias G. Haberl et al.   NATURE METHODS

U-Net: deep learning for cell counting, detection, and morphometry

(2018) Thorsten Falk et al.   NATURE METHODS

Deep Learning Automates the Quantitative Analysis of Individual Cells in Live-Cell Imaging Experiments

(2016) David A. Van Valen et al.   PLoS Computational Biology

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS