Plastid introgression and evolution of African miombo woodlands: New insights from the plastome‐based phylogeny of Brachystegia trees

Plastome phylogeography in two African rain forest legume trees reveals that Dahomey Gap populations originate from the Cameroon volcanic line

(2020) Boris B. Demenou et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Seed and pollen dispersal distances in two African legume timber trees and their reproductive potential under selective logging

(2019) Olivier J. Hardy et al.   MOLECULAR ECOLOGY

OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes

(2019) Stephan Greiner et al.   NUCLEIC ACIDS RESEARCH

Phylogenetic relationships in two African Cedreloideae tree genera (Meliaceae) reveal multiple rain/dry forest transitions

(2019) Franck K. Monthe et al.   PERSPECTIVES IN PLANT ECOLOGY EVOLUTION AND SYSTEMATICS

Synchronous rise of African C4 ecosystems 10 million years ago in the absence of aridification

(2019) Pratigya J. Polissar et al.   Nature Geoscience

ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

(2018) Emmanuel Paradis et al.   BIOINFORMATICS

Tropical savannas and dry forests

(2018) R. Toby Pennington et al.   CURRENT BIOLOGY

Multiple shifts to open habitats in Melastomateae (Melastomataceae) congruent with the increase of African Neogene climatic aridity

(2018) Marie Claire Veranso-Libalah et al.   JOURNAL OF BIOGEOGRAPHY

Phylogeography of a widespread sub-Saharan murid rodent Aethomys chrysophilus: the role of geographic barriers and paleoclimate in the Zambezian bioregion

(2018) Vladimír Mazoch et al.   MAMMALIA

Evolution in the Amphi-Atlantic tropical genus Guibourtia (Fabaceae, Detarioideae), combining NGS phylogeny and morphology

(2018) Félicien Tosso et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

A new phylogeny-based tribal classification of subfamily Detarioideae, an early branching clade of florally diverse tropical arborescent legumes

(2018) Manuel de la Estrella et al.   Scientific Reports

Differentiation underground: Range-wide multilocus genetic structure of the silvery mole-rat does not support current taxonomy based on mitochondrial sequences

(2018) Josef Bryja et al.   MAMMALIAN BIOLOGY

A sharp floristic discontinuity revealed by the biogeographic regionalization of African savannas

(2018) Adeline Fayolle et al.   JOURNAL OF BIOGEOGRAPHY

Comparative systematics and phylogeography of Quercus Section Cerris in western Eurasia: inferences from plastid and nuclear DNA variation

(2018) Marco Cosimo Simeone et al.   PeerJ

A time and a place for everything: phylogenetic history and geography as joint predictors of oak plastome phylogeny

(2017) Kasey K. Pham et al.   GENOME

Extensive seed and pollen dispersal and assortative mating in the rain forest tree Entandrophragma cylindricum (Meliaceae) inferred from indirect and direct analyses

(2017) Franck Kameni Monthe et al.   MOLECULAR ECOLOGY

Evolution in African tropical trees displaying ploidy-habitat association: The genus Afzelia (Leguminosae)

(2017) Armel S.L. Donkpegan et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Insights on the evolutionary origin of Detarioideae, a clade of ecologically dominant tropical African trees

(2017) Manuel de la Estrella et al.   NEW PHYTOLOGIST

GeSeq – versatile and accurate annotation of organelle genomes

(2017) Michael Tillich et al.   NUCLEIC ACIDS RESEARCH

Phylogeography of the genus Podococcus (Palmae/Arecaceae) in Central African rain forests: Climate stability predicts unique genetic diversity

(2016) A. Faye et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Telling plant species apart with DNA: from barcodes to genomes

(2016) Peter M. Hollingsworth et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Bandage: interactive visualization ofde novogenome assemblies: Fig. 1.

(2015) Ryan R. Wick et al.   BIOINFORMATICS

Herbarium genomics: plastome sequence assembly from a range of herbarium specimens using an Iterative Organelle Genome Assembly pipeline

(2015) Freek T. Bakker et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Multilocus phylogeography of a widespread savanna-woodland-adapted rodent reveals the influence of Pleistocene geomorphology and climate change in Africa's Zambezi region

(2015) Molly M. McDonough et al.   MOLECULAR ECOLOGY

Intra-individual polymorphism in chloroplasts from NGS data: where does it come from and how to handle it?

(2015) N. Scarcelli et al.   Molecular Ecology Resources

The contrasting nature of woody plant species in different neotropical forest biomes reflects differences in ecological stability

(2015) R. Toby Pennington et al.   NEW PHYTOLOGIST

Congruent phylogeographical patterns of eight tree species in Atlantic Central Africa provide insights into the past dynamics of forest cover

(2014) G. Dauby et al.   MOLECULAR ECOLOGY

Comparative Phylogeography in Rainforest Trees from Lower Guinea, Africa

(2014) Myriam Heuertz et al.   PLoS One

VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing

(2012) D. C. Koboldt et al.   GENOME RESEARCH

Evidence for Adaptation to Fire Regimes in the Tropical Savannas of the Brazilian Cerrado

(2012) Marcelo F. Simon et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Cenozoic imprints on the phylogenetic structure of palm species assemblages worldwide

(2012) W. D. Kissling et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Native bees mediate long-distance pollen dispersal in a shade coffee landscape mosaic

(2010) S. Jha et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

A multidisciplinary study of archaeological grape seeds

(2009) Enrico Cappellini et al.   NATURWISSENSCHAFTEN

Savanna burning and the assessment of long-term fire experiments with particular reference to Zimbabwe

(2009) Peter A. Furley et al.   PROGRESS IN PHYSICAL GEOGRAPHY

Gene flow and species delimitation

(2009) Rémy J. Petit et al.   TRENDS IN ECOLOGY & EVOLUTION

Phylogenetic patterns and diversification in the caesalpinioid legumesThis paper is one of a selection of papers published in the Special Issue on Systematics Research.

(2008) Anne Bruneau et al.   Botany