Mesopelagic microbial carbon production correlates with diversity across different marine particle fractions

Microhabitats are associated with diversity-productivity relationships in freshwater bacterial communities

(2020) Marian L Schmidt et al.   FEMS MICROBIOLOGY ECOLOGY

Major role of particle fragmentation in regulating biological sequestration of CO2 by the oceans

(2020) Nathan Briggs et al.   SCIENCE

The oceans’ twilight zone must be studied now, before it is too late

(2020) Adrian Martin et al.   NATURE

Sampling Device-Dependence of Prokaryotic Community Structure on Marine Particles: Higher Diversity Recovered by in situ Pumps Than by Oceanographic Bottles

(2020) Viena Puigcorbé et al.   Frontiers in Microbiology

Multi-faceted particle pumps drive carbon sequestration in the ocean

(2019) Philip W. Boyd et al.   NATURE

Global Trends in Marine Plankton Diversity across Kingdoms of Life

(2019) Federico M. Ibarbalz et al.   CELL

Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis

(2019) Jethro S. Johnson et al.   Nature Communications

DNA metabarcoding reveals organisms contributing to particulate matter flux to abyssal depths in the North East Pacific ocean

(2019) Christina M. Preston et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

The missing piece of the upper mesopelagic carbon budget? Biomass, vertical distribution and feeding of aggregate-associated copepods at the PAP site

(2019) Marja Koski et al.   PROGRESS IN OCEANOGRAPHY

Sinking particles promote vertical connectivity in the ocean microbiome

(2018) Mireia Mestre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic Analysis of Human Norovirus Strains in Japan in 2016–2017

(2018) Koo Nagasawa et al.   Frontiers in Microbiology

Prokaryotic Niche Partitioning Between Suspended and Sinking Marine Particles

(2018) Manon T Duret et al.   Environmental Microbiology Reports

Diversity and community composition of particle-associated and free-living bacteria in mesopelagic and bathypelagic Southern Ocean water masses: Evidence of dispersal limitation in the Bransfield Strait

(2017) Mathias Milici et al.   LIMNOLOGY AND OCEANOGRAPHY

Ocean biogeochemistry modeled with emergent trait-based genomics

(2017) V. J. Coles et al.   SCIENCE

Bacterial Succession on Sinking Particles in the Ocean's Interior

(2017) Erik A. Pelve et al.   Frontiers in Microbiology

Environmental drivers of a microbial genomic transition zone in the ocean’s interior

(2017) Daniel R. Mende et al.   Nature Microbiology

Connectivity between surface and deep waters determines prokaryotic diversity in the North Atlantic Deep Water

(2016) Alexander H. Frank et al.   ENVIRONMENTAL MICROBIOLOGY

Vertical Distribution of Bacterial Communities in the Indian Ocean as Revealed by Analyses of 16S rRNA and nasA Genes

(2016) Xuexia Jiang et al.   INDIAN JOURNAL OF MICROBIOLOGY

Plankton networks driving carbon export in the oligotrophic ocean

(2016) Lionel Guidi et al.   NATURE

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Marine mixotrophy increases trophic transfer efficiency, mean organism size, and vertical carbon flux

(2016) Ben A. Ward et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Large-scale distribution of microbial and viral populations in the South Atlantic Ocean

(2016) Daniele De Corte et al.   Environmental Microbiology Reports

Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton

(2015) A Apprill et al.   AQUATIC MICROBIAL ECOLOGY

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

The multiple fates of sinking particles in the North Atlantic Ocean

(2015) James R. Collins et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Acinetobacter albensis sp. nov., isolated from natural soil and water ecosystems

(2015) Lenka Krizova et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Bacterial diversity and community composition from seasurface to subseafloor

(2015) Emily A Walsh et al.   ISME Journal

Colonization in the Photic Zone and Subsequent Changes during Sinking Determine Bacterial Community Composition in Marine Snow

(2014) Stefan Thiele et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A review of prokaryotic populations and processes in sub-seafloor sediments, including biosphere:geosphere interactions

(2014) R. John Parkes et al.   MARINE GEOLOGY

Reconciliation of the carbon budget in the ocean’s twilight zone

(2014) Sarah L. C. Giering et al.   NATURE

The Biological Carbon Pump in the North Atlantic

(2014) Richard Sanders et al.   PROGRESS IN OCEANOGRAPHY

Global relationship between phytoplankton diversity and productivity in the ocean

(2014) S. M. Vallina et al.   Nature Communications

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Vertical Profiles of Bacteria in the Tropical and Subarctic Oceans Revealed by Pyrosequencing

(2013) Hongmei Jing et al.   PLoS One

The relative contribution of fast and slow sinking particles to ocean carbon export

(2012) J. S. Riley et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Sampling for particulate trace element determination using water sampling bottles: methodology and comparison to in situ pumps

(2012) Hélène Planquette et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Pole-to-pole biogeography of surface and deep marine bacterial communities

(2012) J.-F. Ghiglione et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Heterotrophic bacterial production and extracellular enzymatic activity in sinking particulate matter in the western North Pacific Ocean

(2012) Namiha Yamada et al.   Frontiers in Microbiology

The Ecology, Biology and Pathogenesis of Acinetobacter spp.: An Overview

(2011) Hamuel James Doughari et al.   MICROBES AND ENVIRONMENTS

Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean

(2011) B. K. Swan et al.   SCIENCE

Assessing the apparent imbalance between geochemical and biochemical indicators of meso- and bathypelagic biological activity: What the @$♯! is wrong with present calculations of carbon budgets?

(2010) Adrian B. Burd et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Links between viral and prokaryotic communities throughout the water column in the (sub)tropical Atlantic Ocean

(2010) Daniele De Corte et al.   ISME Journal

Ecological consequences of bacterioplankton lifestyles: changes in concepts are needed

(2010) Hans-Peter Grossart   Environmental Microbiology Reports

Effects of hydrostatic pressure on microbial alteration of sinking fecal pellets

(2009) Christian Tamburini et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Hydrostatic pressure affects physiology and community structure of marine bacteria during settling to 4000 m: an experimental approach

(2009) HP Grossart et al.   MARINE ECOLOGY PROGRESS SERIES

The impact of remineralization depth on the air–sea carbon balance

(2009) Eun Young Kwon et al.   Nature Geoscience

Organic biomarkers in the twilight zone—Time series and settling velocity sediment traps during MedFlux

(2008) Stuart G. Wakeham et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY