RNAi Mediated Hypoxia Stress Tolerance in Plants

Conserved and nuanced hierarchy of gene regulatory response to hypoxia

(2020) Travis A. Lee et al.   NEW PHYTOLOGIST

Functional characterization of Arabidopsis ARGONAUTE 3 in reproductive tissues

(2020) Pauline E. Jullien et al.   PLANT JOURNAL

Endogenous hypoxia in lateral root primordia controls root architecture by antagonizing auxin signaling in Arabidopsis

(2019) Vinay Shukla et al.   Molecular Plant

Dual regulation of Arabidopsis AGO2 by arginine methylation

(2019) Po Hu et al.   Nature Communications

ARGONAUTE1 and ARGONAUTE4 regulate gene expression and hypoxia tolerance

(2019) Elena Loreti et al.   PLANT PHYSIOLOGY

Post-transcriptional gene silencing triggers dispensable DNA methylation in gene body in Arabidopsis

(2019) Christelle Taochy et al.   NUCLEIC ACIDS RESEARCH

Integrative analysis from the epigenome to translatome uncovers patterns of dominant nuclear regulation during transient stress

(2019) Travis A Lee et al.   PLANT CELL

Arabidopsis ARGONAUTE 1 Binds Chromatin to Promote Gene Transcription in Response to Hormones and Stresses

(2018) Chang Liu et al.   DEVELOPMENTAL CELL

Exploring miRNAs for developing climate-resilient crops: A perspective review

(2018) Jin Xu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Noncanonical Alternative Polyadenylation Contributes to Gene Regulation in Response to Hypoxia

(2017) Laura de Lorenzo et al.   PLANT CELL

Age-dependent regulation of ERF-VII transcription factor activity in Arabidopsis thaliana

(2017) Beatrice Giuntoli et al.   PLANT CELL AND ENVIRONMENT

Gene Regulation and Survival under Hypoxia Requires Starch Availability and Metabolism

(2017) Elena Loreti et al.   PLANT PHYSIOLOGY

Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles

(2017) Beatrice Giuntoli et al.   PLANT PHYSIOLOGY

Plant cysteine oxidases are dioxygenases that directly enable arginyl transferase-catalysed arginylation of N-end rule targets

(2017) Mark D. White et al.   Nature Communications

Non-coding RNAs and Their Roles in Stress Response in Plants

(2017) Jingjing Wang et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Phytohormonal crosstalk modulates the expression of miR166/165s, target Class III HD-ZIPs, and KANADI genes during root growth in Arabidopsis thaliana

(2017) Archita Singh et al.   Scientific Reports

Plant responses to flooding stress

(2016) Elena Loreti et al.   CURRENT OPINION IN PLANT BIOLOGY

The role of microRNA in abiotic stress response in plants

(2016) N. V. Koroban et al.   MOLECULAR BIOLOGY

Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana

(2016) Mingli Xu et al.   PLoS Genetics

MicroRNAs As Potential Targets for Abiotic Stress Tolerance in Plants

(2016) Varsha Shriram et al.   Frontiers in Plant Science

Oxygen Sensing and Signaling

(2015) Joost T. van Dongen et al.   Annual Review of Plant Biology

Molecular evolution and diversification of the Argonaute family of proteins in plants

(2015) Ravi K Singh et al.   BMC PLANT BIOLOGY

ArabidopsisTOE proteins convey a photoperiodic signal to antagonize CONSTANS and regulate flowering time

(2015) Bailong Zhang et al.   GENES & DEVELOPMENT

Flood adaptive traits and processes: an overview

(2015) Laurentius A. C. J. Voesenek et al.   NEW PHYTOLOGIST

Functional mapping of the plant small RNA methyltransferase: HEN1 physically interacts with HYL1 and DICER-LIKE 1 proteins

(2015) Simona Baranauskė et al.   NUCLEIC ACIDS RESEARCH

Redundant ERF-VII transcription factors bind an evolutionarily-conserved cis-motif to regulate hypoxia-responsive gene expression in Arabidopsis

(2015) Philipp Gasch et al.   PLANT CELL

Group VII Ethylene Response Factors Coordinate Oxygen and Nitric Oxide Signal Transduction and Stress Responses in Plants

(2015) Daniel J. Gibbs et al.   PLANT PHYSIOLOGY

The Diversity, Biogenesis, and Activities of Endogenous Silencing Small RNAs inArabidopsis

(2014) Nicolas G. Bologna et al.   Annual Review of Plant Biology

MicroRNA mediates DNA methylation of target genes

(2014) Wangxiong Hu et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Specific but interdependent functions for Arabidopsis AGO4 and AGO6 in RNA-directed DNA methylation

(2014) C.-G. Duan et al.   EMBO JOURNAL

Balanced activity of microRNA166/165 and its target transcripts from the class III homeodomain-leucine zipper family regulates root growth in Arabidopsis thaliana

(2014) Archita Singh et al.   PLANT CELL REPORTS

Plant cysteine oxidases control the oxygen-dependent branch of the N-end-rule pathway

(2014) Daan A. Weits et al.   Nature Communications

MicroRNAs Inhibit the Translation of Target mRNAs on the Endoplasmic Reticulum in Arabidopsis

(2013) Shengben Li et al.   CELL

A Protodermal miR394 Signal Defines a Region of Stem Cell Competence in the Arabidopsis Shoot Meristem

(2013) Steffen Knauer et al.   DEVELOPMENTAL CELL

Multiple RNA recognition patterns during microRNA biogenesis in plants

(2013) N. G. Bologna et al.   GENOME RESEARCH

NOT2 Proteins Promote Polymerase II-Dependent Transcription and Interact with Multiple MicroRNA Biogenesis Factors in Arabidopsis

(2013) L. Wang et al.   PLANT CELL

Biogenesis, Turnover, and Mode of Action of Plant MicroRNAs

(2013) K. Rogers et al.   PLANT CELL

Wait or escape? Contrasting submergence tolerance strategies of Rorippa amphibia, Rorippa sylvestris and their hybrid

(2012) Melis Akman et al.   ANNALS OF BOTANY

Genome-wide identification and analysis of microRNA responding to long-term waterlogging in crown roots of maize seedlings

(2012) Lihong Zhai et al.   PHYSIOLOGIA PLANTARUM

IAA-Ala Resistant3, an Evolutionarily Conserved Target of miR167, Mediates Arabidopsis Root Architecture Changes during High Osmotic Stress

(2012) N. Kinoshita et al.   PLANT CELL

Functional Analysis of Three Arabidopsis ARGONAUTES Using Slicer-Defective Mutants

(2012) A. Carbonell et al.   PLANT CELL

Transcriptional Regulation of Arabidopsis MIR168a and ARGONAUTE1 Homeostasis in Abscisic Acid and Abiotic Stress Responses

(2012) W. Li et al.   PLANT PHYSIOLOGY

Widespread dynamic DNA methylation in response to biotic stress

(2012) R. H. Dowen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functions of microRNAs in plant stress responses

(2012) Ramanjulu Sunkar et al.   TRENDS IN PLANT SCIENCE

The role of Mediator in small and long noncoding RNA production inArabidopsis thaliana

(2011) Yun Ju Kim et al.   EMBO JOURNAL

Cyclophilin 40 facilitates HSP90-mediated RISC assembly in plants

(2011) Taichiro Iki et al.   EMBO JOURNAL

Homeostatic response to hypoxia is regulated by the N-end rule pathway in plants

(2011) Daniel J. Gibbs et al.   NATURE

Dicing Bodies

(2011) Q. Liu et al.   PLANT PHYSIOLOGY

An Antiviral Defense Role of AGO2 in Plants

(2011) Jagger J. W. Harvey et al.   PLoS One

In Vitro Assembly of Plant RNA-Induced Silencing Complexes Facilitated by Molecular Chaperone HSP90

(2010) Taichiro Iki et al.   MOLECULAR CELL

Hypoxia responsive gene expression is mediated by various subsets of transcription factors and miRNAs that are determined by the actual oxygen availability

(2010) Francesco Licausi et al.   NEW PHYTOLOGIST

Identification and analysis of seven H2O2-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)

(2010) Tian Li et al.   NUCLEIC ACIDS RESEARCH

miR390,Arabidopsis TAS3tasiRNAs, and TheirAUXIN RESPONSE FACTORTargets Define an Autoregulatory Network Quantitatively Regulating Lateral Root Growth

(2010) Elena Marin et al.   PLANT CELL

Form, Function, and Regulation of ARGONAUTE Proteins

(2010) Allison Mallory et al.   PLANT CELL

The Sequential Action of miR156 and miR172 Regulates Developmental Timing in Arabidopsis

(2009) Gang Wu et al.   CELL

Triggering the formation of tasiRNAs in Arabidopsis thaliana: the role of microRNA miR173

(2009) Felipe F Felippes et al.   EMBO REPORTS

Expression analysis of phytohormone-regulated microRNAs in rice, implying their regulation roles in plant hormone signaling

(2009) Qing Liu et al.   FEBS LETTERS

Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis

(2009) Dov Moldovan et al.   JOURNAL OF EXPERIMENTAL BOTANY

Small silencing RNAs: an expanding universe

(2009) Megha Ghildiyal et al.   NATURE REVIEWS GENETICS

Phenotypic Plasticity of Adventitious Rooting in Arabidopsis Is Controlled by Complex Regulation of AUXIN RESPONSE FACTOR Transcripts and MicroRNA Abundance

(2009) L. Gutierrez et al.   PLANT CELL

Biotic and abiotic stress down-regulate miR398 expression in Arabidopsis

(2009) Guru Jagadeeswaran et al.   PLANTA

Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis

(2009) A. Mustroph et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Submergence-responsive MicroRNAs are Potentially Involved in the Regulation of Morphological and Metabolic Adaptations in Maize Root Cells

(2008) Zuxin Zhang et al.   ANNALS OF BOTANY

Flooding Stress: Acclimations and Genetic Diversity

(2008) J. Bailey-Serres et al.   Annual Review of Plant Biology

Specificity of ARGONAUTE7-miR390 Interaction and Dual Functionality in TAS3 Trans-Acting siRNA Formation

(2008) Taiowa A. Montgomery et al.   CELL

The ARGONAUTE10 gene modulates shoot apical meristem maintenance and establishment of leaf polarity by repressing miR165/166 in Arabidopsis

(2008) Qili Liu et al.   PLANT JOURNAL

MicroRNA166 controls root and nodule development in Medicago truncatula

(2008) Adnane Boualem et al.   PLANT JOURNAL

Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)

(2008) C. Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana

(2008) S. Laubinger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Widespread Translational Inhibition by Plant miRNAs and siRNAs

(2008) P. Brodersen et al.   SCIENCE