4.7 Article

High-Frequency Fe-H and Fe-H2 Modes in a trans-Fe(η2-H2)(H) Complex: A Speed Record for Nuclear Resonance Vibrational Spectroscopy

Journal

INORGANIC CHEMISTRY
Volume 60, Issue 2, Pages 556-560

Publisher

AMER CHEMICAL SOC
DOI: 10.1021/acs.inorgchem.0c03006

Keywords

-

Funding

  1. Ministry of Science and Technology of Taiwan
  2. Academia Sinica [AS-SS-108-02-1, AS-iMate-109-22, AS-SS-109-07]
  3. Deutsche Forschungsgemeinschaft (German Research Foundation) under Germany's Excellence Strategy [EXC 2008-390540038 UniSysCat]
  4. National Institutes of Health [GM65440]
  5. U.S. Department of Energy Office of Science User Facility [DE-AC02-05CH11231]

Ask authors/readers for more resources

Nuclear resonance vibrational spectroscopy (NRVS) and density functional theory (DFT) are complementary tools for studying the vibrational structures of molecular systems. By applying NRVS and DFT to study the trans-[Fe-57(eta(2)-H-2)(H)(dppe)(2)][BPh4] complex, it has been shown that NRVS can quantitatively analyze sample composition.
Nuclear resonance vibrational spectroscopy (NRVS) and density functional theory (DFT) are complementary tools for studying the vibrational and geometric structures of specific isotopically labeled molecular systems. Here we apply NRVS and DFT to characterize the trans-[Fe-57(eta(2)-H-2)(H)(dppe)(2)][BPh4] [dppe = 1,2-bis(diphenylphosphino)ethane] complex. Heretofore, most NRVS observations have centered on the spectral region below 1000 cm(-1), where the Fe-57 signal is strongest. In this work, we show that state-of-the-art synchrotron facilities can extend the observable region to 2000 cm(-1) and likely beyond, in measurements that require less than 1 day. The Fe-57-H stretch was revealed at 1915 cm(-1), along with the asymmetric Fe-57-H-2 stretch at 1774 cm(-1). For a small fraction of the H-2-dissociated product, the Fe-57-H stretch was detected at 1956 cm(-1). The unique sensitivity to Fe-57 motion and the isolated nature of the Fe-H/H-2 stretching modes enabled NRVS to quantitatively analyze the sample composition.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.7
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Correction Instruments & Instrumentation

Guidelines for de novo phasing using multiple small-wedge data collection (vol 28, pg 1284, 2021)

Seiki Baba, Hiroaki Matsuura, Takashi Kawamura, Naoki Sakai, Yuki Nakamura, Yoshiaki Kawano, Nobuhiro Mizuno, Takashi Kumasaka, Masaki Yamamoto, Kunio Hirata

JOURNAL OF SYNCHROTRON RADIATION (2022)

Article Chemistry, Inorganic & Nuclear

Substrate-Gated Transformation of a Pre-Catalyst into an Iron-Hydride Intermediate [(NO)2(CO)Fe(μ-H)Fe(CO)(NO)2]- for Catalytic Dehydrogenation of Dimethylamine Borane

Vladimir Pelmenschikov, Chien-Hong Chen, I-Jui Hsu, Ulf-Peter Apfel, Giorgio Caserta, Lars Lauterbach, Tsai-Te Lu, Yu-Ting Tseng, Linda Iffland-Mu''hlhaus, Donato Calabrese, Yu-Che Chang, Konstantin Laun, Chih-Wen Pao, Ilya Sergueev, Yoshitaka Yoda, Wen-Feng Liaw

Summary: Efforts are being made to develop earth-abundant metal catalysts for dehydrogenation/hydrolysis of amine boranes. In this study, complex 3-K-crown was explored as a pre-catalyst for the dehydrogenation of DMAB, and the transformation of 3-K-crown into intermediate A during H-2 generation was supported by experimental and computational results. The substrate-gated transformation of pre-catalyst 3 into intermediate A was also observed in the reaction of complex 4-Na-crown with CO as an alternative synthetic route.

INORGANIC CHEMISTRY (2023)

Article Chemistry, Multidisciplinary

Substrate-Dependent Conformational Switch of the Noncubane [4Fe-4S] Cluster in Heterodisulfide Reductase HdrB

Vladimir Pelmenschikov, Delfim Ferreira, Sofia S. Venceslau, Peter Hildebrandt, Ines A. . C. Pereira, Smilja Todorovic, Smilja Todorovic

Summary: In this study, resonance Raman spectroscopy and density functional theory calculations were used to investigate the structural, electronic, and vibrational properties of the noncubane [4Fe-4S] cluster in heterodisulfide reductase (HdrB). Homology modeling was employed to predict the protein environment of the neighboring clusters in DvHdrB. The results showed that the oxidized [4Fe-4S](3+) cluster adopts a closed conformation in the absence of substrate, but transitions to an open structure upon substrate coordination, accompanied by a ligand switch. This study provides valuable insights for future research on enzymes with this unconventional cofactor.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2023)

Article Chemistry, Inorganic & Nuclear

Bimetallic Carbonyl Complexes Based on Iridium and Rhodium: Useful Tools for Hydrodefluorination Reactions

Konrad Kretschmar, Vladimir Pelmenschikov, Martin Kaupp, Thomas Braun, Philipp Wittwer, Simon Rachor, Jesvita Cardozo

Summary: A set of bimetallic complexes based on iridium and rhodium with various bridging ligands were synthesized and studied for catalytic hydrodefluorination reactions using molecular hydrogen and sodium tert-butoxide. The effects of ligand variation, nuclearity, and metal identity were investigated to optimize the hydrodefluorination process.

EUROPEAN JOURNAL OF INORGANIC CHEMISTRY (2023)

Article Chemistry, Multidisciplinary

Structure determination and magnetic studies of triazole chelated Co(II) coordination polymers

Bo-Hau Chen, Jun-Jia Xu, Wei-Ren Lai, Chung-Kai Chang, Jeng-Lung Chen, Jyh-Fu Lee, Jin-Ming Chen, Hwo-Shuenn Sheu, Jey-Jau Lee, Yoshiki Kubota, Ming-Hsi Chiang, Yasutaka Kitagawa, Yu-Chun Chuang, I-Jui Hsu

Summary: Two cobalt(II) halide complexes, [Co(Htrz)Cl-2](n) and {[Co(Htrz)(2)(trz)]BF4}(n), with 1,2,4-triazole as a ligand, were synthesized. The structures of these complexes were determined using extended x-ray absorption fine structure (EXAFS) and powder x-ray diffraction (XRD). Both complexes form one-dimensional polymeric chains with Co center dot center dot center dot Co distances of 3.3521(2) A and 3.8629(2) A, respectively. The analysis of Co L-II,L-III-edge XAS indicates that the Co(II) in these complexes are in a high spin state with t(2g)(5)e(g)(2) configuration. The broken-symmetry DFT calculations reveal that the antiferromagnetic coupling state of Co center dot center dot center dot Co is the most stable state in both complexes, with coupling constants of -0.32 cm(-1) and -3.70 cm(-1) for complexes 1 and 2, respectively. The antiferromagnetic interaction is achieved through triazole ligands based on the distances of Co center dot center dot center dot Co and coupling constants.

JOURNAL OF THE CHINESE CHEMICAL SOCIETY (2023)

Article Chemistry, Multidisciplinary

Biologically inspired 3Fe4S cluster as structural mimics of FeMoco M-cluster

Ting Yi Lai, Chang-Ting Chen, Kai-Ti Chu, Su-Ying Chien, Tiow-Gan Ong, Ming-Hsi Chiang

Summary: A new 3Fe4S cluster related to M-cluster of Mo-nitrogenase is reported. It is synthesized from the structural rearrangement of [K(THF)(2)][(mu,kappa(2)-bdt)Fe-2(mu-PPh2)(CO)(5)] under visible light irradiation. The Fe-hydride species (1H) with bridging hydride group is generated and characterized by H-1-NMR spectroscopy and DFT calculation. Complex 1 exhibits reversible reduction and oxidation processes in CH3CN solution.

JOURNAL OF THE CHINESE CHEMICAL SOCIETY (2023)

Article Chemistry, Multidisciplinary

Room temperature X-ray absorption spectroscopy of metalloenzymes with drop-on-demand sample delivery at XFELs

Isabel Bogacz, Hiroki Makita, Philipp S. S. Simon, Miao Zhang, Margaret D. D. Doyle, Ruchira Chatterjee, Thomas Fransson, Clemens Weninger, Franklin Fuller, Leland Gee, Takahiro Sato, Matthew Seaberg, Roberto Alonso-Mori, Uwe Bergmann, Vittal K. K. Yachandra, Jan Kern, Junko Yano

Summary: X-ray crystallography and X-ray spectroscopy are important in understanding the interplay of structural changes in proteins and chemical changes at metal active sites. In this study, we developed methods for X-ray absorption spectroscopy (XAS) to study dilute biological samples using X-ray free electron lasers. Our focus was on Photosystem II (PS II), a membrane protein complex, which catalyzes water oxidation using a Mn4CaO5 cluster. We describe our method for collecting XAS data using PS II samples with a low Mn concentration, employing a drop-on-demand sample delivery method.

PURE AND APPLIED CHEMISTRY (2023)

Article Chemistry, Multidisciplinary

An S=1 Iron(IV) Intermediate Revealed in a Non-Heme Iron Enzyme-Catalyzed Oxidative C-S Bond Formation

Jared C. Paris, Sha Hu, Aiwen Wen, Andrew C. Weitz, Ronghai Cheng, Leland B. Gee, Yijie Tang, Hyomin Kim, Arturo Vegas, Wei-chen Chang, Sean J. Elliott, Pinghua Liu, Yisong Guo

Summary: This study reports the first observation of a spin iron(IV) species in non-heme iron enzymes, which enables the formation of C-S bond catalyzed by OvoA in Methyloversatilis thermotolerans. This finding paves the way for understanding the mechanism of enzymatic oxidative C-S bond formation in the OSHA biosynthesis pathway.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2023)

Article Chemistry, Multidisciplinary

X-ray Spectroscopic Study of the Electronic Structure of a Trigonal High-Spin Fe(IV)=O Complex Modeling Non-Heme Enzyme Intermediates and Their Reactivity

Augustin Braun, Leland B. Gee, Michael W. Mara, Ethan A. Hill, Thomas Kroll, Dennis Nordlund, Dimosthenis Sokaras, Pieter Glatzel, Britt Hedman, Keith O. Hodgson, A. S. Borovik, Michael L. Baker, Edward I. Solomon

Summary: Fe K-edge XAS is widely used for studying high-valent iron intermediates in catalysts. The 4p-mixing into the 3d orbitals complicates the analysis, but understanding it correctly enables deeper insights into the structure and reactivity. This study reveals that the loss of inversion in the equatorial plane leads to 4p mixing into the 3dx2-y2,xy orbitals, providing structural insights for distinguishing 6- vs 5-coordinate active sites. Furthermore, the study investigates the electronic structure of Fe(IV)=O active sites and their reactivity selectivity through O K-edge XAS.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2023)

Article Chemistry, Multidisciplinary

Unraveling Metal-Ligand Bonding in an HNO-Evolving {FeNO}6 Complex with a Combined X-ray Spectroscopic Approach

Leland B. Gee, Jinkyu Lim, Thomas Kroll, Dimosthenis Sokaras, Roberto Alonso-Mori, Chien-Ming Lee

Summary: We utilized hard X-ray spectroscopic methods to identify the structural features and reaction mechanisms of two photolabile {FeNO}(6) complexes, providing a foundation for future research.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2023)

Article Multidisciplinary Sciences

Synthesis, structural analysis, and properties of highly twisted alkenes 13,13'-bis(dibenzo[a,i]fluorenylidene) and its derivatives

Hao-Wen Kang, Yu-Chiao Liu, Wei-Kai Shao, Yu-Chen Wei, Chi-Tien Hsieh, Bo-Han Chen, Chih-Hsuan Lu, Shang-Da Yang, Mu-Jeng Cheng, Pi-Tai Chou, Ming-Hsi Chiang, Yao-Ting Wu

Summary: The synthesis, structures, and properties of highly twisted alkenes were investigated. The rotation of the central C = C bonds in these compounds is as facile as the rotation of aryl-aryl bonds in 2-fluorobiphenyl. The compounds exhibit broad photoabsorption range, reduced HOMO-LUMO gap, and small singlet-triplet energy gap.

NATURE COMMUNICATIONS (2023)

Article Biochemical Research Methods

Elucidating polymorphs of crystal structures by intensity-based hierarchical clustering analysis of multiple diffraction data sets

Hiroaki Matsuura, Naoki Sakai, Sachiko Toma-Fukai, Norifumi Muraki, Koki Hayama, Hironari Kamikubo, Shigetoshi Aono, Yoshiaki Kawano, Masaki Yamamoto, Kunio Hirata

Summary: In macromolecular structure determination using X-ray diffraction from multiple crystals, hierarchical clustering analysis (HCA) has been effective in classifying polymorphous data sets with a certain threshold, allowing for the identification of polymorphs in data sets with unknown structural heterogeneity. Additionally, polymorphs can also be detected in single crystals using the continuous helical scheme.

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2023)

Article Chemistry, Physical

Capillary-induced self-crumpled and sulfur-deficient MoS2 nanosheets inhibit polysulfide cycling in lithium-sulfur batteries

Rohan Paste, Shenghan Li, Jui-Han Fu, Yu-Hsiang Chiang, Arif I. Inamdar, Ming-Hsi Chiang, Vincent Tung, Hong-Cheu Lin, Chih Wei Chu

Summary: Stable lithium-sulfur batteries have the potential to be the next generation of stable energy-storage devices. This study introduces a modified separator (MC separator) with crumpled MoS2 nanosheets, which can adsorb lithium polysulfides and provide additional reaction sites, leading to enhanced specific capacity and cycling stability of the battery.

JOURNAL OF MATERIALS CHEMISTRY A (2023)

Article Chemistry, Inorganic & Nuclear

The effect of anions in the synthesis and structure of pyrazolylamidino copper(II) complexes

Chang-Chih Hsieh, Po-Kuang Liao, Chia-Wei Chen, Ming-Hsi Chiang, Yih-Chern Horng

Summary: In this study, six new pyrazolylamidino Cu(II) complexes were synthesized from the direct reaction of Cu(X)(2) salts and pyrazole in nitrile solution. The complexes were characterized using various spectroscopic techniques and X-ray crystallographic analysis. The crystal structures of the complexes revealed diverse supramolecular assemblies through different interactions. EPR results indicated weak magnetic couplings between Cu(II) centers. The study also proposed a plausible synthetic path for synthesizing pyrazolylamidino Cu(II) complexes.

DALTON TRANSACTIONS (2023)

Meeting Abstract Biochemistry & Molecular Biology

Investigating Allostery and Electron Transfer in Human DNA Primase

Courtney Petersen, Leland Gee, Adam Jenkins, Hongxin Wang, Simon George, Yoshitaka Yoda, Nobutomo Nagasawa, Hiroaki Matsuura, Hannah Shafaat, Stephen Cramer, Matthew Thompson

PROTEIN SCIENCE (2023)

No Data Available