4.2 Article

Predictive immunogenetic markers in COVID-19

Journal

HUMAN IMMUNOLOGY
Volume 82, Issue 4, Pages 247-254

Publisher

ELSEVIER SCIENCE INC
DOI: 10.1016/j.humimm.2021.01.008

Keywords

HLA-B; KIR; Cytokine polymorphisms; COVID-19

Categories

Funding

  1. Conselho Nacional de Desenvolvimento Cientifico e Tecnologico, Brasil (CNPq) [401235/20203]
  2. Coordenacao de Aperfeicoamento de Pessoal de Nivel Superior, Brasil (CAPES) [88887.198075/2018-00]

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Immunorelevant genes are closely related to the progression and prognosis of COVID-19, with correlations observed between specific HLA-B alleles and polymorphisms in cytokine genes and mortality rates. These findings suggest potential host genetic markers for future surveys on COVID-19.
Immunorelevant genes are among the most probable modulators of coronavirus disease 2019 (COVID-19) progression and prognosis. However, in the few months of the pandemic, data generated on host genetics has been scarce. The present study retrieved data sets of HLA-B alleles, KIR genes and functional single nucleotide polymorphisms (SNPs) in cytokines related to COVID-19 cytokine storm from two publicly available databases: Allele Frequency Net Database and Ensembl, and correlated these frequency data with Case Fatality Rate (CFR) and Daily Death Rates (DDR) across countries. Correlations of eight HLA-B alleles and polymorphisms in three cytokine genes (IL6, IL10, and IL12B) were observed and were mainly associated with DDR. Additionally, HLA-B correlations suggest that differences in allele affinities to SARSCoV-2 peptides are also associated with DDR. These results may provide rationale for future host genetic marker surveys on COVID-19. (C) 2021 American Society for Histocompatibility and Immunogenetics. Published by Elsevier Inc. All rights reserved.

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