Fungal community structure and function shifts with atmospheric nitrogen deposition

A trait-based understanding of wood decomposition by fungi

(2020) Nicky Lustenhouwer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dynamic species-specific metabolic changes in the trees exposed to chronic N+S additions at the Bear Brook Watershed in Maine, USA

(2019) Rakesh Minocha et al.   ANNALS OF FOREST SCIENCE

Anthropogenic N deposition, fungal gene expression, and an increasing soil carbon sink in the Northern Hemisphere

(2019) Donald R. Zak et al.   ECOLOGY

Defining trait-based microbial strategies with consequences for soil carbon cycling under climate change

(2019) Ashish A. Malik et al.   ISME Journal

Anthropogenic N deposition increases soil C storage by reducing the relative abundance of lignolytic fungi

(2018) Elizabeth M. Entwistle et al.   ECOLOGICAL MONOGRAPHS

Natural re-colonization and admixture of wolves (Canis lupus) in the US Pacific Northwest: challenges for the protection and management of rare and endangered taxa

(2018) Sarah A. Hendricks et al.   HEREDITY

Global negative effects of nitrogen deposition on soil microbes

(2018) Tian’an Zhang et al.   ISME Journal

Simulated nitrogen deposition favors stress-tolerant fungi with low potential for decomposition

(2018) Eric W. Morrison et al.   SOIL BIOLOGY & BIOCHEMISTRY

Biological Sexing of a 4000-Year-Old Egyptian Mummy Head to Assess the Potential of Nuclear DNA Recovery from the Most Damaged and Limited Forensic Specimens

(2018) Odile Loreille et al.   Genes

Nutrient retention during ecosystem succession: a revised conceptual model

(2018) Gary M Lovett et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Manganese limitation as a mechanism for reduced decomposition in soils under atmospheric nitrogen deposition

(2018) Emily D. Whalen et al.   SOIL BIOLOGY & BIOCHEMISTRY

An environmental DNA sampling method for aye-ayes from their feeding traces

(2018) Megan L. Aylward et al.   Ecology and Evolution

A keystone microbial enzyme for nitrogen control of soil carbon storage

(2018) Ji Chen et al.   Science Advances

Decreased atmospheric nitrogen deposition in eastern North America: Predicted responses of forest ecosystems

(2018) Frank S. Gilliam et al.   ENVIRONMENTAL POLLUTION

Atmospheric nitrogen deposition impacts on the structure and function of forest mycorrhizal communities: A review

(2018) Erik A. Lilleskov et al.   ENVIRONMENTAL POLLUTION

Nitrogen limitation of decomposition and decay: How can it occur?

(2017) Colin Averill et al.   GLOBAL CHANGE BIOLOGY

Microbial taxa and functional genes shift in degraded soil with bacterial wilt

(2017) Hongchun Zhang et al.   Scientific Reports

A new genus of horse from Pleistocene North America

(2017) Peter D Heintzman et al.   eLife

Chronic nitrogen additions fundamentally restructure the soil fungal community in a temperate forest

(2016) Eric W. Morrison et al.   Fungal Ecology

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Soil extracellular enzyme activities, soil carbon and nitrogen storage under nitrogen fertilization: A meta-analysis

(2016) Siyang Jian et al.   SOIL BIOLOGY & BIOCHEMISTRY

Twenty-five-year response of the herbaceous layer of a temperate hardwood forest to elevated nitrogen deposition

(2016) Frank S. Gilliam et al.   Ecosphere

Response of forest soil respiration to nutrient addition depends on site fertility

(2015) Hongzhang Kang et al.   BIOGEOCHEMISTRY

Fungal Traits That Drive Ecosystem Dynamics on Land

(2015) Kathleen K. Treseder et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Targeted gene enrichment and high-throughput sequencing for environmental biomonitoring: a case study using freshwater macroinvertebrates

(2015) Eddy J. Dowle et al.   Molecular Ecology Resources

Differential responses of total and active soil microbial communities to long-term experimental N deposition

(2015) Zachary B. Freedman et al.   SOIL BIOLOGY & BIOCHEMISTRY

Changes in litter quality caused by simulated nitrogen deposition reinforce the N-induced suppression of litter decay

(2015) Linda T. A. van Diepen et al.   Ecosphere

Forest floor community metatranscriptomes identify fungal and bacterial responses to N deposition in two maple forests

(2015) Cedar N. Hesse et al.   Frontiers in Microbiology

Conducting Meta-Analyses inRwith themetaforPackage

(2015) Wolfgang Viechtbauer   Journal of Statistical Software

Chronic nitrogen additions suppress decomposition and sequester soil carbon in temperate forests

(2014) S. D. Frey et al.   BIOGEOCHEMISTRY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Endemism and functional convergence across the North American soil mycobiome

(2014) J. M. Talbot et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nitrogen Addition Increases Carbon Storage in Soils, But Not in Trees, in an Eastern U.S. Deciduous Forest

(2013) Gary M. Lovett et al.   ECOSYSTEMS

Consequences of human modification of the global nitrogen cycle

(2013) J. W. Erisman et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The production and turnover of extramatrical mycelium of ectomycorrhizal fungi in forest soils: role in carbon cycling

(2013) A. Ekblad et al.   PLANT AND SOIL

Long-Term Experimental Nitrogen Deposition Alters the Composition of the Active Fungal Community in the Forest Floor

(2013) Elizabeth M. Entwistle et al.   SOIL SCIENCE SOCIETY OF AMERICA JOURNAL

Microbial Mechanisms Mediating Increased Soil C Storage under Elevated Atmospheric N Deposition

(2012) Sarah D. Eisenlord et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes

(2012) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNA helicases

(2012) George W. Owttrim   RNA Biology

The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

(2012) D. Floudas et al.   SCIENCE

Extramatrical mycelia of ectomycorrhizal fungi as moderators of carbon dynamics in forest soil

(2012) John W.G. Cairney   SOIL BIOLOGY & BIOCHEMISTRY

Microbial responses to a changing environment: implications for the future functioning of terrestrial ecosystems

(2011) Donald R. Zak et al.   Fungal Ecology

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

(2011) Martin Kircher et al.   NUCLEIC ACIDS RESEARCH

Relationship between soil enzyme activities, nutrient cycling and soil fungal communities in a northern hardwood forest

(2011) David J. Burke et al.   SOIL BIOLOGY & BIOCHEMISTRY

Seasonal dynamics of soil respiration and N mineralization in chronically warmed and fertilized soils

(2011) A. R. Contosta et al.   Ecosphere

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Nitrogen availability is a primary determinant of conifer mycorrhizas across complex environmental gradients

(2010) Filipa Cox et al.   ECOLOGY LETTERS

A global perspective on belowground carbon dynamics under nitrogen enrichment

(2010) Lingli Liu et al.   ECOLOGY LETTERS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Impacts of elevated N inputs on north temperate forest soil C storage, C/N, and net N-mineralization

(2009) L.E. Nave et al.   GEODERMA

Are Basidiomycete Laccase Gene Abundance and Composition Related to Reduced Lignolytic Activity Under Elevated Atmospheric NO3 − Deposition in a Northern Hardwood Forest?

(2008) John E. Hassett et al.   MICROBIAL ECOLOGY

Negative impact of nitrogen deposition on soil buffering capacity

(2008) William D. Bowman et al.   Nature Geoscience