CLAVATA Signaling Ensures Reproductive Development in Plants across Thermal Environments

Climate change and the need for agricultural adaptation

(2020) Robyn Anderson et al.   CURRENT OPINION IN PLANT BIOLOGY

Genetic analysis of the Arabidopsis TIR1/AFB auxin receptors reveals both overlapping and specialized functions

(2020) Michael J Prigge et al.   eLife

Protocol Update for large-scale genome and gene function analysis with the PANTHER classification system (v.14.0)

(2019) Huaiyu Mi et al.   Nature Protocols

Evolution of buffering in a genetic circuit controlling plant stem cell proliferation

(2019) Daniel Rodriguez-Leal et al.   NATURE GENETICS

Primed histone demethylation regulates shoot regenerative competency

(2019) Hiroya Ishihara et al.   Nature Communications

The developmental-genetics of canalization

(2018) Benedikt Hallgrimsson et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Regulation of Division and Differentiation of Plant Stem Cells

(2018) Edith Pierre-Jerome et al.   Annual Review of Cell and Developmental Biology

The Gene Ontology Resource: 20 years and still GOing strong

(2018)   NUCLEIC ACIDS RESEARCH

Differential analysis of RNA-seq incorporating quantification uncertainty

(2017) Harold Pimentel et al.   NATURE METHODS

Increased efficiency of targeted mutagenesis by CRISPR/Cas9 in plants using heat stress

(2017) Chantal LeBlanc et al.   PLANT JOURNAL

indCAPS: A tool for designing screening primers for CRISPR/Cas9 mutagenesis events

(2017) Charles Hodgens et al.   PLoS One

CLAVATA1 controls distinct signaling outputs that buffer shoot stem cell proliferation through a two-step transcriptional compensation loop

(2017) Zachary L. Nimchuk   PLoS Genetics

Live Imaging of Shoot Meristems on an Inverted Confocal Microscope Using an Objective Lens Inverter Attachment

(2017) Zachary L. Nimchuk et al.   Frontiers in Plant Science

Ready, aim, shoot: stem cell regulation of the shoot apical meristem

(2016) Cara L Soyars et al.   CURRENT OPINION IN PLANT BIOLOGY

Mechanisms of auxin signaling

(2016) Meirav Lavy et al.   DEVELOPMENT

CLAVATA-WUSCHEL signaling in the shoot meristem

(2016) Marc Somssich et al.   DEVELOPMENT

Live confocal imaging of Arabidopsis flower buds

(2016) Nathanaël Prunet et al.   DEVELOPMENTAL BIOLOGY

Near-optimal probabilistic RNA-seq quantification

(2016) Nicolas L Bray et al.   NATURE BIOTECHNOLOGY

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

Comprehensive identification and clustering of CLV3/ESR-related (CLE) genes in plants finds groups with potentially shared function

(2016) David M. Goad et al.   NEW PHYTOLOGIST

Molecular and genetic control of plant thermomorphogenesis

(2016) Marcel Quint et al.   Nature Plants

Genome-Wide Assessment of Efficiency and Specificity in CRISPR/Cas9 Mediated Multiple Site Targeting in Arabidopsis

(2016) Brenda A. Peterson et al.   PLoS One

Molecular mechanisms governing differential robustness of development and environmental responses in plants

(2015) Jennifer Lachowiec et al.   ANNALS OF BOTANY

ELF3 Controls Thermoresponsive Growth in Arabidopsis

(2015) Mathew S. Box et al.   CURRENT BIOLOGY

Plant stem cell maintenance by transcriptional cross-regulation of related receptor kinases

(2015) Z. L. Nimchuk et al.   DEVELOPMENT

Normalization of RNA-seq data using factor analysis of control genes or samples

(2014) Davide Risso et al.   NATURE BIOTECHNOLOGY

A Molecular Framework for Auxin-Mediated Initiation of Flower Primordia

(2013) Nobutoshi Yamaguchi et al.   DEVELOPMENTAL CELL

The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote

(2013) Yang Liao et al.   NUCLEIC ACIDS RESEARCH

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

PIF4–Mediated Activation of YUCCA8 Expression Integrates Temperature into the Auxin Pathway in Regulating Arabidopsis Hypocotyl Growth

(2012) Jiaqiang Sun et al.   PLoS Genetics

GC-Content Normalization for RNA-Seq Data

(2011) Davide Risso et al.   BMC BIOINFORMATICS

The auxin signalling network translates dynamic input into robust patterning at the shoot apex

(2011) T. Vernoux et al.   Molecular Systems Biology

An Evolutionarily Conserved Pseudokinase Mediates Stem Cell Production in Plants

(2011) Z. L. Nimchuk et al.   PLANT CELL

Type-A response regulators are required for proper root apical meristem function through post-transcriptional regulation of PIN auxin efflux carriers

(2011) Wenjing Zhang et al.   PLANT JOURNAL

Natural Variation in Arabidopsis: From Molecular Genetics to Ecological Genomics

(2011) D. Weigel   PLANT PHYSIOLOGY

PHYTOCHROME-INTERACTING FACTOR 4 (PIF4) regulates auxin biosynthesis at high temperature

(2011) K. A. Franklin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conversion of tryptophan to indole-3-acetic acid by TRYPTOPHAN AMINOTRANSFERASES OF ARABIDOPSIS and YUCCAs in Arabidopsis

(2011) C. Won et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The main auxin biosynthesis pathway in Arabidopsis

(2011) K. Mashiguchi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RPK2 is an essential receptor-like kinase that transmits the CLV3 signal in Arabidopsis

(2010) A. Kinoshita et al.   DEVELOPMENT

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Stem Cell Signaling in Arabidopsis Requires CRN to Localize CLV2 to the Plasma Membrane

(2009) A. Bleckmann et al.   PLANT PHYSIOLOGY

AINTEGUMENTA and AINTEGUMENTA-LIKE6 Act Redundantly to Regulate Arabidopsis Floral Growth and Patterning

(2009) BethA. Krizek   PLANT PHYSIOLOGY

The Receptor Kinase CORYNE of Arabidopsis Transmits the Stem Cell-Limiting Signal CLAVATA3 Independently of CLAVATA1

(2008) R. Muller et al.   PLANT CELL

A Genome-Wide Functional Investigation into the Roles of Receptor-Like Proteins in Arabidopsis

(2008) G. Wang et al.   PLANT PHYSIOLOGY

Arabidopsis CLV3 Peptide Directly Binds CLV1 Ectodomain

(2008) M. Ogawa et al.   SCIENCE