NeuroPAL: A Multicolor Atlas for Whole-Brain Neuronal Identification in C. elegans

Neuron ID dataset facilitates neuronal annotation for whole-brain activity imaging of C. elegans

(2020) Yu Toyoshima et al.   BMC BIOLOGY

The connectome of the Caenorhabditis elegans pharynx

(2020) Steven J. Cook et al.   JOURNAL OF COMPARATIVE NEUROLOGY

Structured Odorant Response Patterns across a Complete Olfactory Receptor Neuron Population

(2019) Guangwei Si et al.   NEURON

Whole-animal connectomes of both Caenorhabditis elegans sexes

(2019) Steven J. Cook et al.   NATURE

A quantitative model of conserved macroscopic dynamics predicts future motor commands

(2019) Connor Brennan et al.   eLife

Nested Neuronal Dynamics Orchestrate a Behavioral Hierarchy across Timescales

(2019) Harris S. Kaplan et al.   NEURON

Distributed rhythm generators underlie Caenorhabditis elegans forward locomotion

(2018) Anthony D Fouad et al.   eLife

Neuronal cell-type classification: challenges, opportunities and the path forward

(2017) Hongkui Zeng et al.   NATURE REVIEWS NEUROSCIENCE

Neuromodulatory connectivity defines the structure of a behavioral neural network

(2017) Feici Diao et al.   eLife

A bright cyan-excitable orange fluorescent protein facilitates dual-emission microscopy and enhances bioluminescence imaging in vivo

(2016) Jun Chu et al.   NATURE BIOTECHNOLOGY

The Multilayer Connectome of Caenorhabditis elegans

(2016) Barry Bentley et al.   PLoS Computational Biology

Pan-neuronal screening in Caenorhabditis elegans reveals asymmetric dynamics of AWC neurons is critical for thermal avoidance behavior

(2016) Ippei Kotera et al.   eLife

A cellular and regulatory map of the GABAergic nervous system of C. elegans

(2016) Marie Gendrel et al.   eLife

Global Brain Dynamics Embed the Motor Command Sequence of Caenorhabditis elegans

(2015) Saul Kato et al.   CELL

Large-scale imaging in small brains

(2015) Misha B Ahrens et al.   CURRENT OPINION IN NEUROBIOLOGY

Brainbow: New Resources and Emerging Biological Applications for Multicolor Genetic Labeling and Analysis

(2015) Tamily A. Weissman et al.   GENETICS

Spillover Transmission Is Mediated by the Excitatory GABA Receptor LGC-35 in C. elegans

(2015) M. A. Jobson et al.   JOURNAL OF NEUROSCIENCE

Regulatory Logic of Pan-Neuronal Gene Expression in C. elegans

(2015) Nikolaos Stefanakis et al.   NEURON

Pan-neuronal imaging in roamingCaenorhabditis elegans

(2015) Vivek Venkatachalam et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hierarchical sparse coding in the sensory system ofCaenorhabditis elegans

(2015) Alon Zaslaver et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Whole-brain calcium imaging with cellular resolution in freely behavingCaenorhabditis elegans

(2015) Jeffrey P. Nguyen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Whole-central nervous system functional imaging in larval Drosophila

(2015) William C. Lemon et al.   Nature Communications

A cellular and regulatory map of the cholinergic nervous system of C. elegans

(2015) Laura Pereira et al.   eLife

Brainbow: New Resources and Emerging Biological Applications for Multicolor Genetic Labeling and Analysis

(2015) Tamily A. Weissman et al.   GENETICS

Non-invasive intravital imaging of cellular differentiation with a bright red-excitable fluorescent protein

(2014) Jun Chu et al.   NATURE METHODS

Versatile genetic paintbrushes: Brainbow technologies

(2014) Benjamin Richier et al.   Wiley Interdisciplinary Reviews-Developmental Biology

Modular Control of Glutamatergic Neuronal Identity in C. elegans by Distinct Homeodomain Proteins

(2013) Esther Serrano-Saiz et al.   CELL

The million mutation project: A new approach to genetics in Caenorhabditis elegans

(2013) O. Thompson et al.   GENOME RESEARCH

Extrasynaptic Muscarinic Acetylcholine Receptors on Neuronal Cell Bodies Regulate Presynaptic Function in Caenorhabditis elegans

(2013) J. P. Chan et al.   JOURNAL OF NEUROSCIENCE

From the connectome to brain function

(2013) Cornelia I Bargmann et al.   NATURE METHODS

Whole-brain functional imaging at cellular resolution using light-sheet microscopy

(2013) Misha B Ahrens et al.   NATURE METHODS

A database of Caenorhabditis elegans behavioral phenotypes

(2013) Eviatar Yemini et al.   NATURE METHODS

Brain-wide 3D imaging of neuronal activity in Caenorhabditis elegans with sculpted light

(2013) Tina Schrödel et al.   NATURE METHODS

High-throughput imaging of neuronal activity in Caenorhabditis elegans

(2013) J. Larsch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Genome-Scale Resource for In Vivo Tag-Based Protein Function Exploration in C. elegans

(2012) Mihail Sarov et al.   CELL

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

TrakEM2 Software for Neural Circuit Reconstruction

(2012) Albert Cardona et al.   PLoS One

An Enhanced Monomeric Blue Fluorescent Protein with the High Chemical Stability of the Chromophore

(2011) Oksana M. Subach et al.   PLoS One

The Big and the Small: Challenges of Imaging the Brain's Circuits

(2011) J. W. Lichtman et al.   SCIENCE

The Q System: A Repressible Binary System for Transgene Expression, Lineage Tracing, and Mosaic Analysis

(2010) Christopher J. Potter et al.   CELL

Metadata matters: access to image data in the real world

(2010) Melissa Linkert et al.   JOURNAL OF CELL BIOLOGY

Genome-Wide Identification of Binding Sites Defines Distinct Functions for Caenorhabditis elegans PHA-4/FOXA in Development and Environmental Response

(2010) Mei Zhong et al.   PLoS Genetics

Lateralized Gustatory Behavior of C. elegans Is Controlled by Specific Receptor-Type Guanylyl Cyclases

(2009) Christopher O. Ortiz et al.   CURRENT BIOLOGY

The Neural Network for Chemotaxis to Tastants in Caenorhabditis elegans Is Specialized for Temporal Differentiation

(2009) T. R. Thiele et al.   JOURNAL OF NEUROSCIENCE

The Allen Brain Atlas: 5 years and beyond

(2009) Allan R. Jones et al.   NATURE REVIEWS NEUROSCIENCE

Functional asymmetry in Caenorhabditis elegans taste neurons and its computational role in chemotaxis

(2008) Hiroshi Suzuki et al.   NATURE

Improving the photostability of bright monomeric orange and red fluorescent proteins

(2008) Nathan C Shaner et al.   NATURE METHODS

Vector-free DNA constructs improve transgene expression in C. elegans

(2007) John F Etchberger et al.   NATURE METHODS