Intrinsic laws of k-mer spectra of genome sequences and evolution mechanism of genomes

Spectrum structures and biological functions of 8-mers in the human genome

(2018) Yun Jia et al.   GENOMICS

Method for the Identification of Taxon-Specific k-mers from Chloroplast Genome: A Case Study on Tomato Plant (Solanum lycopersicum)

(2018) Kairi Raime et al.   Frontiers in Plant Science

De Novo Assembly of Complete Chloroplast Genomes from Non-model Species Based on a K-mer Frequency-Based Selection of Chloroplast Reads from Total DNA Sequences

(2017) Shairul Izan et al.   Frontiers in Plant Science

Viral Phylogenomics Using an Alignment-Free Method: A Three-Step Approach to Determine Optimal Length of k-mer

(2017) Qian Zhang et al.   Scientific Reports

Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis

(2016) Veronika B. Dubinkina et al.   BMC BIOINFORMATICS

Improved assembly of noisy long reads by k -mer validation

(2016) Antonio Bernardo Carvalho et al.   GENOME RESEARCH

Informational laws of genome structures

(2016) Vincenzo Bonnici et al.   Scientific Reports

Epigenomick-mer dictionaries: shedding light on how sequence composition influencesin vivonucleosome positioning

(2015) Raffaele Giancarlo et al.   BIOINFORMATICS

KGCAK: a K-mer based database for genome-wide phylogeny and complexity evaluation

(2015) Dapeng Wang et al.   Biology Direct

Methylated Cytosines Mutate to Transcription Factor Binding Sites that Drive Tetrapod Evolution

(2015) Ximiao He et al.   Genome Biology and Evolution

Rare k-mer DNA: Identification of sequence motifs and prediction of CpG island and promoter

(2015) Ezzeddin Kamil Mohamed Hashim et al.   JOURNAL OF THEORETICAL BIOLOGY

Impacts of Bioinformatics to Medicinal Chemistry

(2015) Kuo-Chen Chou   Medicinal Chemistry

iTIS-PseTNC: A sequence-based predictor for identifying translation initiation site in human genes using pseudo trinucleotide composition

(2014) Wei Chen et al.   ANALYTICAL BIOCHEMISTRY

iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition

(2014) Shou-Hui Guo et al.   BIOINFORMATICS

K-mer natural vector and its application to the phylogenetic analysis of genetic sequences

(2014) Jia Wen et al.   GENE

Comparative analysis using K-mer and K-flank patterns provides evidence for CpG island sequence evolution in mammalian genomes

(2013) H. Chae et al.   NUCLEIC ACIDS RESEARCH

kmer-SVM: a web server for identifying predictive regulatory sequence features in genomic data sets

(2013) Christopher Fletez-Brant et al.   NUCLEIC ACIDS RESEARCH

Comparative Analysis of DNA Word Abundances in Four Yeast Genomes Using a Novel Statistical Background Model

(2013) Ramkumar Hariharan et al.   PLoS One

Phylogeny of Bacterial and Archaeal Genomes Using Conserved Genes: Supertrees and Supermatrices

(2013) Jenna Morgan Lang et al.   PLoS One

Alignment-free phylogeny of whole genomes using underlying subwords

(2012) Matteo Comin et al.   Algorithms for Molecular Biology

Comparison of metagenomic samples using sequence signatures

(2012) Bai Jiang et al.   BMC GENOMICS

A dictionary based informational genome analysis

(2012) Alberto Castellini et al.   BMC GENOMICS

Predicting nucleosome binding motif set and analyzing their distributions around functional sites of human genes

(2012) Tonglaga Bao et al.   CHROMOSOME RESEARCH

Skip the Alignment: Degenerate, Multiplex Primer and Probe Design Using K-mer Matching Instead of Alignments

(2012) David A. Hysom et al.   PLoS One

Phylogeny and beyond: Scientific, historical, and conceptual significance of the first tree of life

(2012) N. R. Pace et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Discriminative prediction of mammalian enhancers from DNA sequence

(2011) D. Lee et al.   GENOME RESEARCH

Genomic DNA k-mer spectra: models and modalities

(2009) Benny Chor et al.   GENOME BIOLOGY