SubtypeDrug: a software package for prioritization of candidate cancer subtype-specific drugs

Prioritization of candidate cancer drugs based on a drug functional similarity network constructed by integrating pathway activities and drug activities

(2019) Jieyi Di et al.   Molecular Oncology

psSubpathway: a software package for flexible identification of phenotype-specific subpathways in cancer progression

(2019) Junwei Han et al.   BIOINFORMATICS

Drug repurposing: progress, challenges and recommendations

(2018) Sudeep Pushpakom et al.   NATURE REVIEWS DRUG DISCOVERY

Pathway-based subnetworks enable cross-disease biomarker discovery

(2018) Syed Haider et al.   Nature Communications

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

GSVA: gene set variation analysis for microarray and RNA-Seq data

(2013) Sonja Hänzelmann et al.   BMC BIOINFORMATICS

Subpathway-GM: identification of metabolic subpathways via joint power of interesting genes and metabolites and their topologies within pathways

(2013) Chunquan Li et al.   NUCLEIC ACIDS RESEARCH

DvD: An R/Cytoscape pipeline for drug repurposing using public repositories of gene expression data

(2012) Clare Pacini et al.   BIOINFORMATICS

SubpathwayMiner: a software package for flexible identification of pathways

(2009) C. Li et al.   NUCLEIC ACIDS RESEARCH