Lactobacillus ruminis strains cluster according to their mammalian gut source

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Whole-Transcriptome Shotgun Sequencing (RNA-seq) Screen Reveals Upregulation of Cellobiose and Motility Operons of Lactobacillus ruminis L5 during Growth on Tetrasaccharides Derived from Barley β-Glucan

(2013) Blair Lawley et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Determining potential probiotic properties of human originated Lactobacillus plantarum strains

(2013) Gülden Başyiğit Kılıç et al.   BIOTECHNOLOGY AND BIOPROCESS ENGINEERING

The core faecal bacterial microbiome of Irish Thoroughbred racehorses

(2013) M.M. O' Donnell et al.   LETTERS IN APPLIED MICROBIOLOGY

Catabolic flexibility of mammalian-associated lactobacilli

(2013) Michelle M O’Donnell et al.   Microbial Cell Factories

Swarming: Flexible Roaming Plans

(2012) J. D. Partridge et al.   JOURNAL OF BACTERIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

(2012) M. Lohse et al.   NUCLEIC ACIDS RESEARCH

Characterization of Pro-Inflammatory Flagellin Proteins Produced by Lactobacillus ruminis and Related Motile Lactobacilli

(2012) B. Anne Neville et al.   PLoS One

Screening for Antimicrobial Resistance Genes and Virulence Factors via Genome Sequencing

(2011) Mads Bennedsen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

(2011) Nabil-Fareed Alikhan et al.   BMC GENOMICS

Genome sequences and comparative genomics of two Lactobacillus ruminis strains from the bovine and human intestinal tracts

(2011) Brian M Forde et al.   Microbial Cell Factories

Carbohydrate catabolic flexibility in the mammalian intestinal commensal Lactobacillus ruminis revealed by fermentation studies aligned to genome annotations

(2011) Michelle M O’ Donnell et al.   Microbial Cell Factories

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Diversity of Lactobacillus and Bifidobacterium in feces of herbivores, omnivores and carnivores

(2010) Akihito Endo et al.   ANAEROBE

Multilocus sequence typing reveals a novel subspeciation of Lactobacillus delbrueckii

(2010) K. Tanigawa et al.   MICROBIOLOGY-SGM

Cell density and mobility protect swarming bacteria against antibiotics

(2010) Mitchell T. Butler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular characterization of the cloacal microbiota of wild and captive parrots

(2010) Panagiotis G. Xenoulis et al.   VETERINARY MICROBIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Exopolysaccharides of Lactobacillus rhamnosus GG form a protective shield against innate immune factors in the intestine

(2010) Sarah Lebeer et al.   Microbial Biotechnology

The effect of age and non-steroidal anti-inflammatory drugs on human intestinal microbiota composition

(2009) Harri Mäkivuokko et al.   BRITISH JOURNAL OF NUTRITION

Changes in faecal bacteria associated with concentrate and forage-only diets fed to horses in training

(2009) B. WILLING et al.   EQUINE VETERINARY JOURNAL

Lactobacillus saerimneriandLactobacillus ruminis: novel human-derived probiotic strains with immunomodulatory activities

(2009) Malai Taweechotipatr et al.   FEMS MICROBIOLOGY LETTERS

Probiotic strains: survival under simulated gastrointestinal conditions, in vitro adhesion to Caco-2 cells and effect on cytokine secretion

(2008) Pilar Fernández de Palencia et al.   EUROPEAN FOOD RESEARCH AND TECHNOLOGY

Lactobacillus capillatus sp. nov., a motile bacterium isolated from stinky tofu brine

(2008) S.-H. Chao et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

FliL is essential for swarming: motor rotation in absence of FliL fractures the flagellar rod in swarmer cells of Salmonella enterica

(2008) Ursula Attmannspacher et al.   MOLECULAR MICROBIOLOGY

Living on a surface: swarming and biofilm formation

(2008) Natalie Verstraeten et al.   TRENDS IN MICROBIOLOGY

Characterization and quantification of feline fecal microbiota using cpn60 sequence-based methods and investigation of animal-to-animal variation in microbial population structure

(2008) Atul R. Desai et al.   VETERINARY MICROBIOLOGY