Oxalate-Degrading Bacillus subtilis Mitigates Urolithiasis in a Drosophila melanogaster Model

Oxidative stress and endoplasmic stress in calcium oxalate stone disease: the chicken or the egg?

(2020) Abhishek Albert et al.   FREE RADICAL RESEARCH

Dietary Adaptation of Microbiota in Drosophila Requires NF-κB-Dependent Control of the Translational Regulator 4E-BP

(2020) Crissie Vandehoef et al.   Cell Reports

Novel probiotic approach to counter Paenibacillus larvae infection in honey bees

(2019) Brendan A. Daisley et al.   ISME Journal

Evaluation of sampling and storage procedures on preserving the community structure of stool microbiota: A simple at-home toilet-paper collection method

(2018) Kait F. Al et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Neural circuits driving larval locomotion in Drosophila

(2018) Matthew Q. Clark et al.   Neural Development

Mutations in the Drosophila homolog of human PLA2G6 give rise to age-dependent loss of psychomotor activity and neurodegeneration

(2018) Konstantin G. Iliadi et al.   Scientific Reports

Drosophila melanogaster as a function-based high-throughput screening model for anti-nephrolithiasis agents in kidney stone patients

(2018) Sohrab N. Ali et al.   Disease Models & Mechanisms

Probiotic characterization of Bacillus subtilis P223 isolated from kimchi

(2017) Hye-Lin Jeon et al.   FOOD SCIENCE AND BIOTECHNOLOGY

A highly specific Escherichia coli qPCR and its comparison with existing methods for environmental waters

(2017) David I. Walker et al.   WATER RESEARCH

Drosophila muscles regulate the immune response against wasp infection via carbohydrate metabolism

(2017) Hairu Yang et al.   Scientific Reports

Drosophila melanogaster as a High-Throughput Model for Host–Microbiota Interactions

(2017) Mark Trinder et al.   Frontiers in Microbiology

The Gut Commensal Microbiome of Drosophila melanogaster Is Modified by the Endosymbiont Wolbachia

(2017) Rama K. Simhadri et al.   mSphere

Neonicotinoid-induced pathogen susceptibility is mitigated by Lactobacillus plantarum immune stimulation in a Drosophila melanogaster model

(2017) Brendan A. Daisley et al.   Scientific Reports

Growthcurver: an R package for obtaining interpretable metrics from microbial growth curves

(2016) Kathleen Sprouffske et al.   BMC BIOINFORMATICS

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Impact of gut microbiota on the fly’s germ line

(2016) Michael Elgart et al.   Nature Communications

Kidney stones

(2016) Saeed R. Khan et al.   Nature Reviews Disease Primers

Quantifying and predicting Drosophila larvae crawling phenotypes

(2016) Maximilian N. Günther et al.   Scientific Reports

Hyperoxaluria leads to dysbiosis and drives selective enrichment of oxalate metabolizing bacterial species in recurrent kidney stone endures

(2016) Mangesh V. Suryavanshi et al.   Scientific Reports

1-Deoxynojirimycin isolated from Bacillus subtilis improves hepatic lipid metabolism and mitochondrial function in high-fat–fed mice

(2015) Hyun Ju Do et al.   FOOD AND CHEMICAL TOXICOLOGY

DNA-protection and antioxidant properties of fermentates fromBacillus amyloliquefaciensB-1895 andBacillus subtilisKATMIRA1933

(2015) E.V. Prazdnova et al.   LETTERS IN APPLIED MICROBIOLOGY

The Interaction between Enterobacteriaceae and Calcium Oxalate Deposits

(2015) Evan Barr-Beare et al.   PLoS One

Wolbachia Utilize Host Actin for Efficient Maternal Transmission in Drosophila melanogaster

(2015) Irene L. G. Newton et al.   PLoS Pathogens

Oxalobacter formigenes: Opening the door to probiotic therapy for the treatment of hyperoxaluria

(2015) Ankush Jairath et al.   Scandinavian Journal of Urology

Evaluation of two Bacillus subtilis strains isolated from Korean fermented food as probiotics against loperamide-induced constipation in mice

(2014) Bae Jin Kim et al.   Journal of the Korean Society for Applied Biological Chemistry

Bifidobacterium animalis subsp. lactis decreases urinary oxalate excretion in a mouse model of primary hyperoxaluria

(2014) Klara Klimesova et al.   Urolithiasis

Bacteria can promote calcium oxalate crystal growth and aggregation

(2013) Somchai Chutipongtanate et al.   JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY

Dietary hyperoxaluria is not reduced by treatment with lactic acid bacteria

(2013) Roswitha Siener et al.   Journal of Translational Medicine

Drosophila melanogaster as an Emerging Translational Model of Human Nephrolithiasis

(2013) Joe Miller et al.   JOURNAL OF UROLOGY

ANOVA-Like Differential Expression (ALDEx) Analysis for Mixed Population RNA-Seq

(2013) Andrew D. Fernandes et al.   PLoS One

Measurement of Lifespan in Drosophila melanogaster

(2013) Nancy J. Linford et al.   Jove-Journal of Visualized Experiments

A high throughput and sensitive method correlates neuronal disorder genotypes to Drosophila larvae crawling phenotypes

(2012) Brandon R. Jakubowski et al.   FLY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Evidence that the Biofungicide Serenade (Bacillus subtilis) Suppresses Clubroot on Canola via Antibiosis and Induced Host Resistance

(2012) R. Lahlali et al.   PHYTOPATHOLOGY

Methods to Assay Drosophila Behavior

(2012) Charles D. Nichols et al.   Jove-Journal of Visualized Experiments

Low-diversity bacterial community in the gut of the fruitfly Drosophila melanogaster

(2011) Chun Nin Adam Wong et al.   ENVIRONMENTAL MICROBIOLOGY

Impact of Dietary Calcium and Oxalate, and Oxalobacter Formigenes Colonization on Urinary Oxalate Excretion

(2011) Juquan Jiang et al.   JOURNAL OF UROLOGY

Ethylene glycol induces calcium oxalate crystal deposition in Malpighian tubules: a Drosophila model for nephrolithiasis/urolithiasis

(2011) Yung-Hsiang Chen et al.   KIDNEY INTERNATIONAL

Effect of NADPH oxidase inhibition on the expression of kidney injury molecule and calcium oxalate crystal deposition in hydroxy-L-proline-induced hyperoxaluria in the male Sprague-Dawley rats

(2011) J. Zuo et al.   NEPHROLOGY DIALYSIS TRANSPLANTATION

Enteric oxalate elimination is induced and oxalate is normalized in a mouse model of primary hyperoxaluria following intestinal colonization with Oxalobacter

(2010) Marguerite Hatch et al.   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

Diet, but not oral probiotics, effectively reduces urinary oxalate excretion and calcium oxalate supersaturation

(2010) John C. Lieske et al.   KIDNEY INTERNATIONAL

Probiotic-induced reduction of gastrointestinal oxalate absorption in healthy subjects

(2010) Joseph Okombo et al.   UROLOGICAL RESEARCH

Human gut microbiome adopts an alternative state following small bowel transplantation

(2009) A. L. Hartman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Determinants of 24-hour Urinary Oxalate Excretion

(2008) E. N. Taylor et al.   Clinical Journal of the American Society of Nephrology

Relationship between Escherichia coli Strains Causing Acute Cystitis in Women and the Fecal E. coli Population of the Host

(2008) E. Moreno et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Oxalobacter formigenes May Reduce the Risk of Calcium Oxalate Kidney Stones

(2008) D. W. Kaufman et al.   JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY

The Roles and Mechanisms of Intestinal Oxalate Transport in Oxalate Homeostasis

(2008) Marguerite Hatch et al.   SEMINARS IN NEPHROLOGY

The Bacterial Symbiont Wolbachia Induces Resistance to RNA Viral Infections in Drosophila melanogaster

(2008) Luís Teixeira et al.   PLOS BIOLOGY