Analysis of the complete mitochondrial genome of Pochonia chlamydosporia suggests a close relationship to the invertebrate-pathogenic fungi in Hypocreales

Sequencing and functional analysis of the genome of a nematode egg-parasitic fungus, Pochonia chlamydosporia

(2014) Eduardo Larriba et al.   FUNGAL GENETICS AND BIOLOGY

High Variability of Mitochondrial Gene Order among Fungi

(2014) Gabriela Aguileta et al.   Genome Biology and Evolution

Cytoplasmic ribosomal protein S3 (rpS3) plays a pivotal role in mitochondrial DNA damage surveillance

(2013) YongJoong Kim et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

The evolution and pathogenic mechanisms of the rice sheath blight pathogen

(2013) Aiping Zheng et al.   Nature Communications

Mitochondrial genome evolution in species belonging to the Phialocephala fortinii s.l. - Acephala applanata species complex

(2012) Angelo Duò et al.   BMC GENOMICS

Sequencing of mitochondrial genomes of nine Aspergillus and Penicillium species identifies mobile introns and accessory genes as main sources of genome size variability

(2012) Vinita Joardar et al.   BMC GENOMICS

Gene cloning, molecular modeling, and phylogenetics of serine protease P32 and serine carboxypeptidase SCP1 from nematophagous fungi Pochonia rubescens and Pochonia chlamydosporia

(2012) Eduardo Larriba et al.   CANADIAN JOURNAL OF MICROBIOLOGY

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Rfam 11.0: 10 years of RNA families

(2012) Sarah W. Burge et al.   NUCLEIC ACIDS RESEARCH

Update on activities at the Universal Protein Resource (UniProt) in 2013

(2012)   NUCLEIC ACIDS RESEARCH

Effects on plant growth and root-knot nematode infection of an endophytic GFP transformant of the nematophagous fungus Pochonia chlamydosporia

(2012) N. Escudero et al.   SYMBIOSIS

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

Mitochondrial genome deletions and minicircles are common in lice (Insecta: Phthiraptera)

(2011) Stephen L Cameron et al.   BMC GENOMICS

Comparative analysis of Fusarium mitochondrial genomes reveals a highly variable region that encodes an exceptionally large open reading frame

(2011) Rasha M. Al-Reedy et al.   FUNGAL GENETICS AND BIOLOGY

Association between translation efficiency and horizontal gene transfer within microbial communities

(2011) Tamir Tuller et al.   NUCLEIC ACIDS RESEARCH

Phylogenetic and biogeographic implications inferred by mitochondrial intergenic region analyses and ITS1-5.8S-ITS2 of the entomopathogenic fungi Beauveria bassiana and B. brongniartii

(2010) Dimitri V Ghikas et al.   BMC MICROBIOLOGY

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

(2010) S. Gnerre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Recent dermatophyte divergence revealed by comparative and phylogenetic analysis of mitochondrial genomes

(2009) Yuan Wu et al.   BMC GENOMICS

Molecular Evolution of the mtDNA Encoded rps3 Gene Among Filamentous Ascomycetes Fungi with an Emphasis on the Ophiostomatoid Fungi

(2009) Jyothi Sethuraman et al.   JOURNAL OF MOLECULAR EVOLUTION

Genes within Genes: Multiple LAGLIDADG Homing Endonucleases Target the Ribosomal Protein S3 Gene Encoded within an rnl Group I Intron of Ophiostoma and Related Taxa

(2009) J. Sethuraman et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fast evolution of the retroprocessed mitochondrial rps3 gene in Conifer II and further evidence for the phylogeny of gymnosperms

(2009) Jin-Hua Ran et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The mitochondrial genome sequence of the arbuscular mycorrhizal fungusGlomus intraradicesisolate 494 and implications for the phylogenetic placement ofGlomus

(2009) Jaikoo Lee et al.   NEW PHYTOLOGIST

Comparative analysis of the complete mitochondrial genomes of Aspergillus niger mtDNA type 1a and Aspergillus tubingensis mtDNA type 2b

(2008) ÁKos Juhász et al.   FEMS MICROBIOLOGY LETTERS

The complete mitochondrial genome of Fusarium oxysporum: Insights into fungal mitochondrial evolution

(2008) Malena P. Pantou et al.   GENE

Evolution of mitochondrial gene orders in echinoderms

(2008) Marleen Perseke et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogeny.fr: robust phylogenetic analysis for the non-specialist

(2008) A. Dereeper et al.   NUCLEIC ACIDS RESEARCH

The mitochondrial genome of the phytopathogenic basidiomycete Moniliophthora perniciosa is 109kb in size and contains a stable integrated plasmid

(2008) Eduardo F. Formighieri et al.