Real-time tracking of protein unfolding with time-resolved x-ray solution scattering

Protein folding from heterogeneous unfolded state revealed by time-resolved X-ray solution scattering

(2020) Tae Wu Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Promoting transparency and reproducibility in enhanced molecular simulations

(2019)   NATURE METHODS

Photoactivation of Drosophila melanogaster cryptochrome through sequential conformational transitions

(2019) Oskar Berntsson et al.   Science Advances

Interpreting solution X-ray scattering data using molecular simulations

(2018) Jochen S Hub   CURRENT OPINION IN STRUCTURAL BIOLOGY

On the Calculation of SAXS Profiles of Folded and Intrinsically Disordered Proteins from Computer Simulations

(2018) João Henriques et al.   JOURNAL OF MOLECULAR BIOLOGY

Direct Observation of Insulin Association Dynamics with Time-Resolved X-ray Scattering

(2017) Dolev Rimmerman et al.   Journal of Physical Chemistry Letters

Time-Resolved X-Ray Solution Scattering Reveals the Structural Photoactivation of a Light-Oxygen-Voltage Photoreceptor

(2017) Oskar Berntsson et al.   STRUCTURE

ATSAS 2.8: a comprehensive data analysis suite for small-angle scattering from macromolecular solutions

(2017) D. Franke et al.   JOURNAL OF APPLIED CRYSTALLOGRAPHY

How Does Your Protein Fold? Elucidating the Apomyoglobin Folding Pathway

(2016) H. Jane Dyson et al.   ACCOUNTS OF CHEMICAL RESEARCH

Cytochromecfolds through foldon-dependent native-like intermediates in an ordered pathway

(2016) Wenbing Hu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Amyloidogenicity of p53: A Hidden Link Between Protein Misfolding and Cancer

(2015) Hao Gong et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

WAXSiS: a web server for the calculation of SAXS/WAXS curves based on explicit-solvent molecular dynamics

(2015) Christopher J. Knight et al.   NUCLEIC ACIDS RESEARCH

Deconvoluting Protein (Un)folding Structural Ensembles Using X-Ray Scattering, Nuclear Magnetic Resonance Spectroscopy and Molecular Dynamics Simulation

(2015) Alexandr Nasedkin et al.   PLoS One

Advanced ensemble modelling of flexible macromolecules using X-ray solution scattering

(2015) Giancarlo Tria et al.   IUCrJ

Validating Solution Ensembles from Molecular Dynamics Simulation by Wide-Angle X-ray Scattering Data

(2014) Po-chia Chen et al.   BIOPHYSICAL JOURNAL

Conformational Substates of Myoglobin Intermediate Resolved by Picosecond X-ray Solution Scattering

(2014) Key Young Oang et al.   Journal of Physical Chemistry Letters

Signal amplification and transduction in phytochrome photosensors

(2014) Heikki Takala et al.   NATURE

A series of PDB-related databanks for everyday needs

(2014) Wouter G. Touw et al.   NUCLEIC ACIDS RESEARCH

Accurate SAXS Profile Computation and its Assessment by Contrast Variation Experiments

(2013) Dina Schneidman-Duhovny et al.   BIOPHYSICAL JOURNAL

Accurate assessment of mass, models and resolution by small-angle scattering

(2013) Robert P. Rambo et al.   NATURE

Introducing a standard method for experimental determination of the solvent response in laser pump, X-ray probe time-resolved wide-angle X-ray scattering experiments on systems in solution

(2013) Kasper Skov Kjær et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Microsecond Folding Dynamics of Apomyoglobin at Acidic pH

(2012) Ming Xu et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Direct Observation of Cooperative Protein Structural Dynamics of Homodimeric Hemoglobin from 100 ps to 10 ms with Pump–Probe X-ray Solution Scattering

(2012) Kyung Hwan Kim et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Protein Structural Dynamics of Photoactive Yellow Protein in Solution Revealed by Pump–Probe X-ray Solution Scattering

(2012) Tae Wu Kim et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Microscopic reversibility as the organizing principle of molecular machines

(2012) R. Dean Astumian   Nature Nanotechnology

PROPKA3: Consistent Treatment of Internal and Surface Residues in Empirical pKaPredictions

(2011) Mats H. M. Olsson et al.   Journal of Chemical Theory and Computation

BioCARS: a synchrotron resource for time-resolved X-ray science

(2011) T. Graber et al.   JOURNAL OF SYNCHROTRON RADIATION

Site-Specific Hydration Dynamics in the Nonpolar Core of a Molten Globule by Dynamic Nuclear Polarization of Water

(2011) Brandon D. Armstrong et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Measurement of protein unfolding/refolding kinetics and structural characterization of hidden intermediates by NMR relaxation dispersion

(2011) D. W. Meinhold et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Spectroscopic studies of protein folding: Linear and nonlinear methods

(2011) Arnaldo L. Serrano et al.   PROTEIN SCIENCE

Implementation of the CHARMM Force Field in GROMACS: Analysis of Protein Stability Effects from Correction Maps, Virtual Interaction Sites, and Water Models

(2010) Pär Bjelkmar et al.   Journal of Chemical Theory and Computation

Protein structural dynamics in solution unveiled via 100-ps time-resolved x-ray scattering

(2010) H. S. Cho et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An unlocking/relocking barrier in conformational fluctuations of villin headpiece subdomain

(2010) A. Reiner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Relaxation Dispersion NMR Spectroscopy as a Tool for Detailed Studies of Protein Folding

(2009) Philipp Neudecker et al.   BIOPHYSICAL JOURNAL

PLUMED: A portable plugin for free-energy calculations with molecular dynamics

(2009) Massimiliano Bonomi et al.   COMPUTER PHYSICS COMMUNICATIONS

SoftWAXS: a computational tool for modeling wide-angle X-ray solution scattering from biomolecules

(2009) Jaydeep Bardhan et al.   JOURNAL OF APPLIED CRYSTALLOGRAPHY

Structural heterogeneity of the various forms of apomyoglobin; Implications for protein folding

(2009) Rudolf Gilmanshin et al.   PROTEIN SCIENCE

Structural Dynamics of Light-Driven Proton Pumps

(2009) Magnus Andersson et al.   STRUCTURE

Role of the Aggresome Pathway in Cancer: Targeting Histone Deacetylase 6-Dependent Protein Degradation

(2008) A. Rodriguez-Gonzalez et al.   CANCER RESEARCH

Protein folding studied by single-molecule FRET

(2008) Benjamin Schuler et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Computer Simulations of the Refolding of Sperm Whale Apomyoglobin from High-Temperature Denaturated State

(2008) Mariangela Dametto et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Tracking the structural dynamics of proteins in solution using time-resolved wide-angle X-ray scattering

(2008) Marco Cammarata et al.   NATURE METHODS

Hierarchical folding mechanism of apomyoglobin revealed by ultra-fast H/D exchange coupled with 2D NMR

(2008) T. Uzawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA