- Home
- Publications
- Publication Search
- Publication Details
Title
Species-Level Analysis of Human Gut Microbiota With Metataxonomics
Authors
Keywords
-
Journal
Frontiers in Microbiology
Volume 11, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2020-08-26
DOI
10.3389/fmicb.2020.02029
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- 1,520 reference genomes from cultivated human gut bacteria enable functional microbiome analyses
- (2019) Yuanqiang Zou et al. NATURE BIOTECHNOLOGY
- A human gut bacterial genome and culture collection for improved metagenomic analyses
- (2019) Samuel C. Forster et al. NATURE BIOTECHNOLOGY
- A new genomic blueprint of the human gut microbiota
- (2019) Alexandre Almeida et al. NATURE
- Rethinking gut microbiome residency and the Enterobacteriaceae in healthy human adults
- (2019) Jonathan N. V. Martinson et al. ISME Journal
- A fatal outbreak of ST11 carbapenem-resistant hypervirulent Klebsiella pneumoniae in a Chinese hospital: a molecular epidemiological study
- (2018) Danxia Gu et al. LANCET INFECTIOUS DISEASES
- Physiology and central carbon metabolism of the gut bacterium Prevotella copri
- (2018) Thomas Franke et al. MOLECULAR MICROBIOLOGY
- Precise Fecal Microbiome of the Herbivorous Tibetan Antelope Inhabiting High-Altitude Alpine Plateau
- (2018) Xiangning Bai et al. Frontiers in Microbiology
- Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania
- (2017) Samuel A. Smits et al. SCIENCE
- Carbohydrate Staple Food Modulates Gut Microbiota of Mongolians in China
- (2017) Jing Li et al. Frontiers in Microbiology
- Microbiome Datasets Are Compositional: And This Is Not Optional
- (2017) Gregory B. Gloor et al. Frontiers in Microbiology
- Metataxonomics reveal vultures as a reservoir for Clostridium perfringens
- (2017) Xiangli Meng et al. Emerging Microbes & Infections
- Enterotypes in the landscape of gut microbial community composition
- (2017) Paul I. Costea et al. Nature Microbiology
- Investigation into the stability and culturability of Chinese enterotypes
- (2017) Yeshi Yin et al. Scientific Reports
- propr: An R-package for Identifying Proportionally Abundant Features Using Compositional Data Analysis
- (2017) Thomas P. Quinn et al. Scientific Reports
- Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity
- (2016) Alexandra Zhernakova et al. SCIENCE
- Population-level analysis of gut microbiome variation
- (2016) Gwen Falony et al. SCIENCE
- Cautionary tale of using 16S rRNA gene sequence similarity values in identification of human-associated bacterial species
- (2015) Morgane Rossi-Tamisier et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Crohn associated microbial communities associated to colonic mucosal biopsies in patients of the western Mediterranean
- (2015) Roberto Vidal et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- Moderate halophilic bacteria colonizing the phylloplane of halophytes of the subfamily Salicornioideae (Amaranthaceae)
- (2015) Merit del Rocío Mora-Ruiz et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- Past and future species definitions for Bacteria and Archaea
- (2015) Ramon Rosselló-Móra et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- The Bacteroides fragilis Toxin Gene Is Prevalent in the Colon Mucosa of Colorectal Cancer Patients
- (2014) Annemarie Boleij et al. CLINICAL INFECTIOUS DISEASES
- Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
- (2014) Pablo Yarza et al. NATURE REVIEWS MICROBIOLOGY
- Probiotics and Its Functionally Valuable Products—A Review
- (2013) Paulraj Kanmani et al. CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION
- UPARSE: highly accurate OTU sequences from microbial amplicon reads
- (2013) Robert C Edgar NATURE METHODS
- LPSN—list of prokaryotic names with standing in nomenclature
- (2013) Aidan C. Parte NUCLEIC ACIDS RESEARCH
- Long-Term Temporal Analysis of the Human Fecal Microbiota Revealed a Stable Core of Dominant Bacterial Species
- (2013) Inés Martínez et al. PLoS One
- Diversity, stability and resilience of the human gut microbiota
- (2012) Catherine A. Lozupone et al. NATURE
- Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
- (2012) Nicholas A Bokulich et al. NATURE METHODS
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- Assessment of Variation in Bacterial Composition among Microhabitats in a Mangrove Environment Using DGGE Fingerprints and Barcoded Pyrosequencing
- (2012) Daniel F. R. Cleary et al. PLoS One
- UCHIME improves sensitivity and speed of chimera detection
- (2011) Robert C. Edgar et al. BIOINFORMATICS
- Fecal carriage of serotype K1 Klebsiella pneumoniae ST23 strains closely related to liver abscess isolates in Koreans living in Korea
- (2011) D. R. Chung et al. EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES
- Automated Identification of Medically Important Bacteria by 16S rRNA Gene Sequencing Using a Novel Comprehensive Database, 16SpathDB
- (2011) P. C. Y. Woo et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Enterotypes of the human gut microbiome
- (2011) Manimozhiyan Arumugam et al. NATURE
- Extreme genome reduction in symbiotic bacteria
- (2011) John P. McCutcheon et al. NATURE REVIEWS MICROBIOLOGY
- Polyamine catabolism contributes to enterotoxigenic Bacteroides fragilis-induced colon tumorigenesis
- (2011) A. C. Goodwin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Impact of a Consortium of Fermented Milk Strains on the Gut Microbiome of Gnotobiotic Mice and Monozygotic Twins
- (2011) N. P. McNulty et al. Science Translational Medicine
- Modular analysis of gene expression data with R
- (2010) G. Csardi et al. BIOINFORMATICS
- A human gut microbial gene catalogue established by metagenomic sequencing
- (2010) Junjie Qin et al. NATURE
- Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses
- (2010) Pablo Yarza et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- A core gut microbiome in obese and lean twins
- (2008) Peter J. Turnbaugh et al. NATURE
- The All-Species Living Tree project: A 16S rRNA-based phylogenetic tree of all sequenced type strains
- (2008) Pablo Yarza et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started