Cortical RORβ is required for layer 4 transcriptional identity and barrel integrity

Pioneer Factor NeuroD1 Rearranges Transcriptional and Epigenetic Profiles to Execute Microglia-Neuron Conversion

(2019) Taito Matsuda et al.   NEURON

Mapping the transcriptional diversity of genetically and anatomically defined cell populations in the mouse brain

(2019) Ken Sugino et al.   eLife

Rorβ regulates selective axon-target innervation in the mammalian midbrain

(2019) Haewon Byun et al.   DEVELOPMENT

Development of the whisker-to-barrel cortex system

(2018) Jenq-Wei Yang et al.   CURRENT OPINION IN NEUROBIOLOGY

Atypical GATA transcription factor TRPS1 represses gene expression by recruiting CHD4/NuRD(MTA2) and suppresses cell migration and invasion by repressing TP63 expression

(2018) Yuzhi Wang et al.   Oncogenesis

An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues

(2017) M Ryan Corces et al.   NATURE METHODS

RORβ Spinal Interneurons Gate Sensory Transmission during Locomotion to Secure a Fluid Walking Gait

(2017) Stephanie C. Koch et al.   NEURON

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework

(2017) Aziz Khan et al.   NUCLEIC ACIDS RESEARCH

Lhx2 Expression in Postmitotic Cortical Neurons Initiates Assembly of the Thalamocortical Somatosensory Circuit

(2017) Chia-Fang Wang et al.   Cell Reports

Hlf is a genetic modifier of epilepsy caused by voltage-gated sodium channel mutations

(2016) Nicole A. Hawkins et al.   EPILEPSY RESEARCH

mGluR5 Exerts Cell-Autonomous Influences on the Functional and Anatomical Development of Layer IV Cortical Neurons in the Mouse Primary Somatosensory Cortex

(2016) C. J. Ballester-Rosado et al.   JOURNAL OF NEUROSCIENCE

Identity of neocortical layer 4 neurons is specified through correct positioning into the cortex

(2016) Koji Oishi et al.   eLife

Positive regulation of neocortical synapse formation by the Plexin-D1 receptor

(2015) F. Wang et al.   BRAIN RESEARCH

Spatio-temporal regulation of the formation of the somatosensory system

(2015) Hiroshi Kawasaki   DEVELOPMENT GROWTH & DIFFERENTIATION

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity

(2014) Matthew T. Weirauch et al.   CELL

Modality-specific thalamocortical inputs instruct the identity of postsynaptic L4 neurons

(2014) Gabrielle Pouchelon et al.   NATURE

Activity-Induced Nr4a1 Regulates Spine Density and Distribution Pattern of Excitatory Synapses in Pyramidal Neurons

(2014) Yelin Chen et al.   NEURON

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Direct lineage reprogramming of post-mitotic callosal neurons into corticofugal neurons in vivo

(2013) Caroline Rouaux et al.   NATURE CELL BIOLOGY

Laminar and Columnar Development of Barrel Cortex Relies on Thalamocortical Neurotransmission

(2013) Hong Li et al.   NEURON

The protomap is propagated to cortical plate neurons through an Eomes-dependent intermediate map

(2013) G. E. Elsen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

BTBD3 Controls Dendrite Orientation Toward Active Axons in Mammalian Neocortex

(2013) A. Matsui et al.   SCIENCE

An isoform of retinoid-related orphan receptor β directs differentiation of retinal amacrine and horizontal interneurons

(2013) Hong Liu et al.   Nature Communications

Software for Computing and Annotating Genomic Ranges

(2013) Michael Lawrence et al.   PLoS Computational Biology

Large-Scale Cellular-Resolution Gene Profiling in Human Neocortex Reveals Species-Specific Molecular Signatures

(2012) Hongkui Zeng et al.   CELL

Development and critical period plasticity of the barrel cortex

(2012) Reha S. Erzurumlu et al.   EUROPEAN JOURNAL OF NEUROSCIENCE

Layer-Specific CREB Target Gene Induction in Human Neocortical Epilepsy

(2012) T. L. Beaumont et al.   JOURNAL OF NEUROSCIENCE

Differential oestrogen receptor binding is associated with clinical outcome in breast cancer

(2012) Caryn S. Ross-Innes et al.   NATURE

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Sensory Experience Restructures Thalamocortical Axons during Adulthood

(2012) Marcel Oberlaender et al.   NEURON

Cortical evolution in mammals: The bane and beauty of phenotypic variability

(2012) L. A. Krubitzer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Measuring reproducibility of high-throughput experiments

(2011) Qunhua Li et al.   Annals of Applied Statistics

How do barrels form in somatosensory cortex?

(2011) Hong Li et al.   Annals of the New York Academy of Sciences

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

RORβ Induces Barrel-like Neuronal Clusters in the Developing Neocortex

(2011) Denis Jabaudon et al.   CEREBRAL CORTEX

What can we get from ‘barrels’: the rodent barrel cortex as a model for studying the establishment of neural circuits

(2011) Chia-Shan Wu et al.   EUROPEAN JOURNAL OF NEUROSCIENCE

RNAscope

(2011) Fay Wang et al.   JOURNAL OF MOLECULAR DIAGNOSTICS

Maturation of a Recurrent Excitatory Neocortical Circuit by Experience-Dependent Unsilencing of Newly Formed Dendritic Spines

(2011) Michael C. Ashby et al.   NEURON

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data

(2010) Robert C McLeay et al.   BMC BIOINFORMATICS

Experience-induced plasticity of thalamocortical axons in both juveniles and adults

(2010) Verena C. Wimmer et al.   JOURNAL OF COMPARATIVE NEUROLOGY

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

Direct conversion of fibroblasts to functional neurons by defined factors

(2010) Thomas Vierbuchen et al.   NATURE

Fezf2 directs the differentiation of corticofugal neurons from striatal progenitors in vivo

(2010) Caroline Rouaux et al.   NATURE NEUROSCIENCE

Relative Contribution of Feedforward Excitatory Connections to Expression of Ocular Dominance Plasticity in Layer 4 of Visual Cortex

(2010) Lena A. Khibnik et al.   NEURON

Thrombospondin type I domain containing 7A (THSD7A) mediates endothelial cell migration and tube formation

(2009) Chieh-Huei Wang et al.   JOURNAL OF CELLULAR PHYSIOLOGY

Role of p11 in Cellular and Behavioral Effects of 5-HT4 Receptor Stimulation

(2009) J. L. Warner-Schmidt et al.   JOURNAL OF NEUROSCIENCE

Application of a Translational Profiling Approach for the Comparative Analysis of CNS Cell Types

(2008) Joseph P. Doyle et al.   CELL

Transcription factor Lmo4 defines the shape of functional areas in developing cortices and regulates sensorimotor control

(2008) Zhenyong Huang et al.   DEVELOPMENTAL BIOLOGY

The T-box transcription factor Eomes/Tbr2 regulates neurogenesis in the cortical subventricular zone

(2008) S. J. Arnold et al.   GENES & DEVELOPMENT

Neurofibromin Is Required for Barrel Formation in the Mouse Somatosensory Cortex

(2008) M. E. Lush et al.   JOURNAL OF NEUROSCIENCE

Bhlhb5 Regulates the Postmitotic Acquisition of Area Identities in Layers II-V of the Developing Neocortex

(2008) Pushkar S. Joshi et al.   NEURON