CRISPR/Cas with ribonucleoprotein complexes and transiently selected telomere vectors allows highly efficient marker-free and multiple genome editing in Botrytis cinerea

Characterization of Botrytis cinerea from commercial cut flower roses

(2019) Melissa Environmental Munoz et al.   PLANT DISEASE

CRISPR/Cas9-based genome-editing in the filamentous fungus Fusarium fujikuroi and its application in strain engineering for gibberellic acid production

(2019) Tian-Qiong Shi et al.   ACS Synthetic Biology

CRISPR-Cas9 genome editing approaches in filamentous fungi and oomycetes

(2019) Mariana Schuster et al.   FUNGAL GENETICS AND BIOLOGY

Cross-kingdom RNA trafficking and environmental RNAi — nature's blueprint for modern crop protection strategies

(2018) Qiang Cai et al.   CURRENT OPINION IN MICROBIOLOGY

Selection is required for efficient Cas9-mediated genome editing in Fusarium graminearum

(2018) Donald M. Gardiner et al.   Fungal Biology

Efficient oligo nucleotide mediated CRISPR-Cas9 gene editing in Aspergilli

(2018) Christina S. Nødvig et al.   FUNGAL GENETICS AND BIOLOGY

Efficient genome editing in Fusarium oxysporum based on CRISPR/Cas9 ribonucleoprotein complexes

(2018) Qiang Wang et al.   FUNGAL GENETICS AND BIOLOGY

Investigations on VELVET regulatory mutants confirm the role of host tissue acidification and secretion of proteins in the pathogenesis of Botrytis cinerea

(2018) Nathalie Müller et al.   NEW PHYTOLOGIST

CRISPR/Cas9 cleavages in budding yeast reveal templated insertions and strand-specific insertion/deletion profiles

(2018) Brenda R. Lemos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Many Shades of Grey in Botrytis –Host Plant Interactions

(2018) Javier Veloso et al.   TRENDS IN PLANT SCIENCE

CRISPR-Cas9 ribonucleoprotein-mediated co-editing and counterselection in the rice blast fungus

(2018) Andrew J. Foster et al.   Scientific Reports

A new transformant selection system for the gray mold fungus Botrytis cinerea based on the expression of fenhexamid-insensitive ERG27 variants

(2017) Kim Christopher Cohrs et al.   FUNGAL GENETICS AND BIOLOGY

Establishment of CRISPR/Cas9 in Alternaria alternata

(2017) Maximilian Wenderoth et al.   FUNGAL GENETICS AND BIOLOGY

Anilinopyrimidine Resistance in Botrytis cinerea Is Linked to Mitochondrial Function

(2017) Andreas Mosbach et al.   Frontiers in Microbiology

A Simple and Universal System for Gene Manipulation in Aspergillus fumigatus : In Vitro -Assembled Cas9-Guide RNA Ribonucleoproteins Coupled with Microhomology Repair Templates

(2017) Qusai Al Abdallah et al.   mSphere

MultiQC: summarize analysis results for multiple tools and samples in a single report

(2016) Philip Ewels et al.   BIOINFORMATICS

Biology and Applications of CRISPR Systems: Harnessing Nature’s Toolbox for Genome Engineering

(2016) Addison V. Wright et al.   CELL

Highly efficient CRISPR mutagenesis by microhomology-mediated end joining in Aspergillus fumigatus

(2016) Chi Zhang et al.   FUNGAL GENETICS AND BIOLOGY

Genome editing in Ustilago maydis using the CRISPR–Cas system

(2016) Mariana Schuster et al.   FUNGAL GENETICS AND BIOLOGY

A gapless genome sequence of the fungusBotrytis cinerea

(2016) Jan A. L. Van Kan et al.   MOLECULAR PLANT PATHOLOGY

CRISPR/Cas9 Based Genome Editing of Penicillium chrysogenum

(2016) C. Pohl et al.   ACS Synthetic Biology

Improved Cell-Penetrating Zinc-Finger Nuclease Proteins for Precision Genome Engineering

(2015) Jia Liu et al.   Molecular Therapy-Nucleic Acids

Off-target Effects in CRISPR/Cas9-mediated Genome Engineering

(2015) Xiao-Hui Zhang et al.   Molecular Therapy-Nucleic Acids

Efficient genome editing in filamentous fungus Trichoderma reesei using the CRISPR/Cas9 system

(2015) Rui Liu et al.   Cell Discovery

A CRISPR-Cas9 System for Genetic Engineering of Filamentous Fungi

(2015) Christina S. Nødvig et al.   PLoS One

Efficiency of different strategies for gene silencing in Botrytis cinerea

(2014) José Espino et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Fitness measurement reveals contrasting costs in homologous recombinant mutants of Botrytis cinerea resistant to succinate dehydrogenase inhibitors

(2014) A. Lalève et al.   FUNGAL GENETICS AND BIOLOGY

DNA interrogation by the CRISPR RNA-guided endonuclease Cas9

(2014) Samuel H. Sternberg et al.   NATURE

Cationic lipid-mediated delivery of proteins enables efficient protein-based genome editing in vitro and in vivo

(2014) John A Zuris et al.   NATURE BIOTECHNOLOGY

In vivoassessment by Mach-Zehnder double-beam interferometry of the invasive force exerted by the Asian soybean rust fungus (Phakopsora pachyrhizi)

(2014) Marco Loehrer et al.   NEW PHYTOLOGIST

Molecular characterisation and detection of resistance to succinate dehydrogenase inhibitor fungicides inBotryotinia fuckeliana(Botrytis cinerea)

(2014) Rita M De Miccolis Angelini et al.   PEST MANAGEMENT SCIENCE

Site-directed mutagenesis of the P225, N230 and H272 residues of succinate dehydrogenase subunit B fromBotrytis cinereahighlights different roles in enzyme activity and inhibitor binding

(2013) Anaïs Lalève et al.   ENVIRONMENTAL MICROBIOLOGY

A Review of Current Knowledge of Resistance Aspects for the Next-Generation Succinate Dehydrogenase Inhibitor Fungicides

(2013) Helge Sierotzki et al.   PHYTOPATHOLOGY

Fitness and Competitive Ability of Botrytis cinerea Field Isolates with Dual Resistance to SDHI and QoI Fungicides, Associated with Several sdhB and the cytb G143A Mutations

(2013) T. Veloukas et al.   PHYTOPATHOLOGY

Resistance to Fluopyram, Fluxapyroxad, and Penthiopyrad in Botrytis cinerea from Strawberry

(2013) Achour Amiri et al.   PLANT DISEASE

Fungal Small RNAs Suppress Plant Immunity by Hijacking Host RNA Interference Pathways

(2013) Arne Weiberg et al.   SCIENCE

RNA-Guided Human Genome Engineering via Cas9

(2013) P. Mali et al.   SCIENCE

Multiplex Genome Engineering Using CRISPR/Cas Systems

(2013) L. Cong et al.   SCIENCE

Gray Mold Populations in German Strawberry Fields Are Resistant to Multiple Fungicides and Dominated by a Novel Clade Closely Related to Botrytis cinerea

(2012) Michaela Leroch et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Tools for Botrytis cinerea: New expression vectors make the gray mold fungus more accessible to cell biology approaches

(2012) Julia Schumacher   FUNGAL GENETICS AND BIOLOGY

The Top 10 fungal pathogens in molecular plant pathology

(2012) RALPH DEAN et al.   MOLECULAR PLANT PATHOLOGY

Differential Effect of SdhB Gene Mutations on the Sensitivity to SDHI Fungicides in Botrytis cinerea

(2012) Thomas Veloukas et al.   PLANT DISEASE

Mutagenesis and Functional Studies with Succinate Dehydrogenase Inhibitors in the Wheat Pathogen Mycosphaerella graminicola

(2012) Gabriel Scalliet et al.   PLoS One

Functional and Structural Comparison of Pyrrolnitrin- and Iprodione-Induced Modifications in the Class III Histidine-Kinase Bos1 of Botrytis cinerea

(2012) Sabine Fillinger et al.   PLoS One

A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity

(2012) M. Jinek et al.   SCIENCE

Living Colors in the Gray Mold Pathogen Botrytis cinerea: Codon-Optimized Genes Encoding Green Fluorescent Protein and mCherry, Which Exhibit Bright Fluorescence

(2011) Michaela Leroch et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Botrytis cinerea phytotoxin botcinic acid requires two polyketide synthases for production and has a redundant role in virulence with botrydial

(2011) BÉRENGÈRE DALMAIS et al.   MOLECULAR PLANT PATHOLOGY

Identification of Pathogenesis-Associated Genes by T-DNA–Mediated Insertional Mutagenesis inBotrytis cinerea: A Type 2A Phosphoprotein Phosphatase and an SPT3 Transcription Factor Have Significant Impact on Virulence

(2011) S. Giesbert et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Validation of a Self-Excising Marker in the Human Pathogen Aspergillus fumigatus by Employing the  -Rec/six Site-Specific Recombination System

(2010) T. Hartmann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Botrytis cinerea xylanase Xyn11A contributes to virulence with its necrotizing activity, not with its catalytic activity

(2010) Judith Noda et al.   BMC PLANT BIOLOGY

Functional analysis and mode of action of phytotoxic Nep1-like proteins of Botrytis cinerea

(2010) Yaite Cuesta Arenas et al.   PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Under pressure: investigating the biology of plant infection by Magnaporthe oryzae

(2009) Richard A. Wilson et al.   NATURE REVIEWS MICROBIOLOGY

Hitchhiking of Cu/Zn Superoxide Dismutase to Peroxisomes - Evidence for a Natural Piggyback Import Mechanism in Mammals

(2009) Markus Islinger et al.   TRAFFIC

Genetic Analysis of Fenhexamid-Resistant Field Isolates of the Phytopathogenic Fungus Botrytis cinerea

(2008) S. Fillinger et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The HOG1-like MAP kinase Sak1 of Botrytis cinerea is negatively regulated by the upstream histidine kinase Bos1 and is not involved in dicarboximide- and phenylpyrrole-resistance

(2008) Weiwei Liu et al.   FUNGAL GENETICS AND BIOLOGY