Miocene diversification of a golden‐thread nanmu tree species ( Phoebe zhennan , Lauraceae) around the Sichuan Basin shaped by the East Asian monsoon

Low genetic differentiation despite high fragmentation in the endemic serpentinophyte Minuartia smejkalii (M. verna agg., Caryophyllaceae) revealed by RADSeq SNP markers

(2020) Bojana Stojanova et al.   CONSERVATION GENETICS

Convergent evolution in floral morphology in a plant ring species, the Caribbean Euphorbia tithymaloides

(2019) N. Ivalú Cacho et al.   AMERICAN JOURNAL OF BOTANY

RADseq approaches and applications for forest tree genetics

(2018) Thomas L. Parchman et al.   Tree Genetics & Genomes

Congruent species delimitation of two controversial gold-thread nanmu tree species based on morphological and restriction site-associated DNA sequencing data

(2018) Xin Ding et al.   Journal of Systematics and Evolution

Evolutionary melting pots and reproductive isolation: A ring-shaped diversification of an odorous frog (Odorrana margaratea ) around the Sichuan Basin

(2018) Liang Qiao et al.   MOLECULAR ECOLOGY

Sharp genetic discontinuity in the aridity-sensitive Lindera obtusiloba (Lauraceae): solid evidence supporting the Tertiary floral subdivision in East Asia

(2017) Jun-Wei Ye et al.   JOURNAL OF BIOGEOGRAPHY

Demographic modelling reveals a history of divergence with gene flow for a glacially tied stonefly in a changing post-Pleistocene landscape

(2017) Scott Hotaling et al.   JOURNAL OF BIOGEOGRAPHY

Minimum sample sizes for population genomics: an empirical study from an Amazonian plant species

(2017) Alison G. Nazareno et al.   Molecular Ecology Resources

Speciation gradients and the distribution of biodiversity

(2017) Dolph Schluter et al.   NATURE

Insights into the historical assembly of East Asian subtropical evergreen broadleaved forests revealed by the temporal history of the tea family

(2017) Xiang-Qin Yu et al.   NEW PHYTOLOGIST

Phenotypic variation in Phoebe bournei populations preserved in the primary distribution area

(2017) Yingang Li et al.   JOURNAL OF FORESTRY RESEARCH

Amplified fragment length polymorphism analysis of the population structure and genetic diversity of Phoebe zhennan (Lauraceae), a native species to China

(2016) Jihai Gao et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

Genetic evidence for central-marginal hypothesis in a Cenozoic relict tree species across its distribution in China

(2016) Xinzeng Wei et al.   JOURNAL OF BIOGEOGRAPHY

Population structure of Atlantic mackerel inferred from RAD-seq-derived SNP markers: effects of sequence clustering parameters and hierarchical SNP selection

(2016) Naiara Rodríguez-Ezpeleta et al.   Molecular Ecology Resources

Harnessing the power of RADseq for ecological and evolutionary genomics

(2016) Kimberly R. Andrews et al.   NATURE REVIEWS GENETICS

Evolution and variability of the Asian monsoon and its potential linkage with uplift of the Himalaya and Tibetan Plateau

(2016) Ryuji Tada et al.   Progress in Earth and Planetary Science

Pollination and seed dispersal are the most threatened processes of plant regeneration

(2016) Eike Lena Neuschulz et al.   Scientific Reports

The tempo of trait divergence in geographic isolation: Avian speciation across the Marañon Valley of Peru

(2015) Benjamin M. Winger et al.   EVOLUTION

Fengshui forests conserve genetic diversity: a case study of Phoebe bournei (Hemsl.) Yang in southern China

(2015) Y.J. Ge et al.   GENETICS AND MOLECULAR RESEARCH

The antiquity of Cyclocarya paliurus (Juglandaceae) provides new insights into the evolution of relict plants in subtropical China since the late Early Miocene

(2015) Yixuan Kou et al.   JOURNAL OF BIOGEOGRAPHY

Distribution of Cenozoic plant relicts in China explained by drought in dry season

(2015) Yongjiang Huang et al.   Scientific Reports

The role of the uplift of the Qinghai-Tibetan Plateau for the evolution of Tibetan biotas

(2014) Adrien Favre et al.   BIOLOGICAL REVIEWS

Reconstructing chemical weathering, physical erosion and monsoon intensity since 25Ma in the northern South China Sea: A review of competing proxies

(2014) Peter D. Clift et al.   EARTH-SCIENCE REVIEWS

Chloroplast phylogeography of the East Asian Arcto-Tertiary relictTetracentron sinense(Trochodendraceae)

(2014) Yanxia Sun et al.   JOURNAL OF BIOGEOGRAPHY

Genomic divergence in a ring species complex

(2014) Miguel Alcaide et al.   NATURE

New lauraceous species from the Siwalik forest of Arunachal Pradesh, eastern Himalaya, and their palaeoclimatic and palaeogeographic implications

(2014) Mahasin Ali KHAN et al.   TURKISH JOURNAL OF BOTANY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

hzar: hybrid zone analysis using an R software package

(2013) Elizabeth P. Derryberry et al.   Molecular Ecology Resources

Understanding the origin of species with genome-scale data: modelling gene flow

(2013) Vitor Sousa et al.   NATURE REVIEWS GENETICS

Multilocus estimation of divergence times and ancestral effective population sizes ofOryzaspecies and implications for the rapid diversification of the genus

(2013) Xin-Hui Zou et al.   NEW PHYTOLOGIST

Comparative phylogeography of two sympatric beeches in subtropical China: Species-specific geographic mosaic of lineages

(2013) Zhi-Yong Zhang et al.   Ecology and Evolution

Robust Demographic Inference from Genomic and SNP Data

(2013) Laurent Excoffier et al.   PLoS Genetics

Strong differences in genetic structure across disjunct, edge, and core populations of the distylous forest herb Pulmonaria officinalis (Boraginaceae)

(2012) Sofie Meeus et al.   AMERICAN JOURNAL OF BOTANY

Ring distributions leading to species formation: a global topographic analysis of geographic barriers associated with ring species

(2012) William B Monahan et al.   BMC BIOLOGY

Molecular data and ecological niche modelling reveal a highly dynamic evolutionary history of the East Asian Tertiary relict Cercidiphyllum (Cercidiphyllaceae)

(2012) Xin-Shuai Qi et al.   NEW PHYTOLOGIST

Population Expanding with the Phalanx Model and Lineages Split by Environmental Heterogeneity: A Case Study of Primula obconica in Subtropical China

(2012) Hai-Fei Yan et al.   PLoS One

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

(2011) H. E. L. Lischer et al.   BIOINFORMATICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Population differentiation in a purported ring species, Acacia karroo (Mimosoideae)

(2011) DAVID WARD   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Choice of predictor variables as a source of uncertainty in continental-scale species distribution modelling under climate change

(2011) Nicholas W. Synes et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Centres of plant endemism in China: places for survival or for speciation?

(2011) Jordi López-Pujol et al.   JOURNAL OF BIOGEOGRAPHY

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

A statistical explanation of MaxEnt for ecologists

(2010) Jane Elith et al.   DIVERSITY AND DISTRIBUTIONS

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Genetic structure and breeding system of a rare understory herb, Dysosma versipellis (Berberidaceae), from temperate deciduous forests in China

(2009) Bi-Cai Guan et al.   AMERICAN JOURNAL OF BOTANY

GENETIC LEAKAGE AFTER ADAPTIVE AND NONADAPTIVE DIVERGENCE IN THEENSATINA ESCHSCHOLTZIIRING SPECIES

(2009) Ricardo J. Pereira et al.   EVOLUTION

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

(2009) Ryan N. Gutenkunst et al.   PLoS Genetics

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

An early Cenozoic perspective on greenhouse warming and carbon-cycle dynamics

(2008) James C. Zachos et al.   NATURE

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One