A pioneer calf foetus microbiome

Factors Affecting Gastrointestinal Microbiome Development in Neonates

(2018) Clara Chong et al.   Nutrients

A critical assessment of the “sterile womb” and “in utero colonization” hypotheses: implications for research on the pioneer infant microbiome

(2017) Maria Elisa Perez-Muñoz et al.   Microbiome

Microbial succession in the gastrointestinal tract of dairy cows from 2 weeks to first lactation

(2017) Kimberly A. Dill-McFarland et al.   Scientific Reports

Development and physiology of the rumen and the lower gut: Targets for improving gut health 1

(2016) Michael A. Steele et al.   JOURNAL OF DAIRY SCIENCE

Invited review: Transitioning from milk to solid feed in dairy heifers

(2016) M.A. Khan et al.   JOURNAL OF DAIRY SCIENCE

Comparison of placenta samples with contamination controls does not provide evidence for a distinct placenta microbiota

(2016) Abigail P. Lauder et al.   Microbiome

Human gut colonisation may be initiated in utero by distinct microbial communities in the placenta and amniotic fluid

(2016) Maria Carmen Collado et al.   Scientific Reports

Uptake of milk with and without solid feed during the monogastric phase: Effect on fibrolytic and methanogenic microorganisms in the gastrointestinal tract of calves

(2015) Cesar E. Guzman et al.   ANIMAL SCIENCE JOURNAL

Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life

(2015) Fredrik Bäckhed et al.   Cell Host & Microbe

Tag jumps illuminated - reducing sequence-to-sample misidentifications in metabarcoding studies

(2015) Ida Baerholm Schnell et al.   Molecular Ecology Resources

Model systems to analyze the role of miRNAs and commensal microflora in bovine mucosal immune system development

(2015) Guanxiang Liang et al.   MOLECULAR IMMUNOLOGY

Characterising the bacterial microbiota across the gastrointestinal tracts of dairy cattle: membership and potential function

(2015) Shengyong Mao et al.   Scientific Reports

The Human Neonatal Gut Microbiome: A Brief Review

(2015) Emily C. Gritz et al.   Frontiers in Pediatrics

Presence of Selected Methanogens, Fibrolytic Bacteria, and Proteobacteria in the Gastrointestinal Tract of Neonatal Dairy Calves from Birth to 72 Hours

(2015) Cesar E. Guzman et al.   PLoS One

Taxonomic Identification of Commensal Bacteria Associated with the Mucosa and Digesta throughout the Gastrointestinal Tracts of Preweaned Calves

(2014) Nilusha Malmuthuge et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

(2014) Susannah J Salter et al.   BMC BIOLOGY

The microbiome, parturition, and timing of birth: more questions than answers

(2014) Amanda L. Prince et al.   JOURNAL OF REPRODUCTIVE IMMUNOLOGY

Meconium Microbiome Analysis Identifies Bacteria Correlated with Premature Birth

(2014) Alexandria N. Ardissone et al.   PLoS One

Exploring the bovine rumen bacterial community from birth to adulthood

(2013) Elie Jami et al.   ISME Journal

Identification of metabolically active proteobacterial and archaeal communities in the rumen by DNA- and RNA-derived 16S rRNA gene

(2013) S.H. Kang et al.   JOURNAL OF APPLIED MICROBIOLOGY

Establishment of ruminal bacterial community in dairy calves from birth to weaning is sequential

(2013) M. Rey et al.   JOURNAL OF APPLIED MICROBIOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Comparative Microbial Analysis of Paired Amniotic Fluid and Cord Blood from Pregnancies Complicated by Preterm Birth and Early-Onset Neonatal Sepsis

(2013) Xiaowei Wang et al.   PLoS One

Bacterial Diversity in Meconium of Preterm Neonates and Evolution of Their Fecal Microbiota during the First Month of Life

(2013) Laura Moles et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

The human milk microbiome changes over lactation and is shaped by maternal weight and mode of delivery

(2012) Raul Cabrera-Rubio et al.   AMERICAN JOURNAL OF CLINICAL NUTRITION

Host Remodeling of the Gut Microbiome and Metabolic Changes during Pregnancy

(2012) Omry Koren et al.   CELL

Human gut microbiome viewed across age and geography

(2012) Tanya Yatsunenko et al.   NATURE

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Human milk: a source of more life than we imagine

(2012) P.V. Jeurink et al.   Beneficial Microbes

Commensal microbiome effects on mucosal immune system development in the ruminant gastrointestinal tract

(2012) Ryan Taschuk et al.   ANIMAL HEALTH RESEARCH REVIEWS

Archaea as emerging organisms in complex human microbiomes

(2011) Bédis Dridi et al.   ANAEROBE

Gene expression in placentation of farm animals: An overview of gene function during development

(2011) R.S.N. Barreto et al.   THERIOGENOLOGY

Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns

(2010) M. G. Dominguez-Bello et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structure of the Archaeal Community of the Rumen

(2008) P. H. Janssen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Is meconium from healthy newborns actually sterile?

(2008) Esther Jiménez et al.   RESEARCH IN MICROBIOLOGY