Network-based prediction and knowledge mining of disease genes

Identification and Evolution of Structurally Dominant Nodes in Protein-Protein Interaction Networks

(2014) Pei Wang et al.   IEEE Transactions on Biomedical Circuits and Systems

MalaCards: an integrated compendium for diseases and their annotation

(2013) Noa Rappaport et al.   Database-The Journal of Biological Databases and Curation

A structure-based protocol for learning the family-specific mechanisms of membrane-binding domains

(2012) M. Kallberg et al.   BIOINFORMATICS

Complex-disease networks of trait-associated single-nucleotide polymorphisms (SNPs) unveiled by information theory

(2012) Haiquan Li et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Understanding Crowd-Powered Search Groups: A Social Network Perspective

(2012) Qingpeng Zhang et al.   PLoS One

The Orphan Disease Networks

(2011) Minlu Zhang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Wnt–β-catenin–Tcf-4 signalling-modulated invasiveness is dependent on osteopontin expression in breast cancer

(2011) A Ravindranath et al.   BRITISH JOURNAL OF CANCER

Disease Ontology: a backbone for disease semantic integration

(2011) L. M. Schriml et al.   NUCLEIC ACIDS RESEARCH

The Dichotomy in Degree Correlation of Biological Networks

(2011) Dapeng Hao et al.   PLoS One

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

Boosting the prediction and understanding of DNA-binding domains from sequence

(2010) R. E. Langlois et al.   NUCLEIC ACIDS RESEARCH

NAPS: a residue-level nucleic acid-binding prediction server

(2010) Matthew B. Carson et al.   NUCLEIC ACIDS RESEARCH

Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets

(2010) Silpa Suthram et al.   PLoS Computational Biology

Associating Genes and Protein Complexes with Disease via Network Propagation

(2010) Oron Vanunu et al.   PLoS Computational Biology

From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations

(2009) P. Du et al.   BIOINFORMATICS

Annotating the human genome with Disease Ontology

(2009) John D Osborne et al.   BMC GENOMICS

Walking the Interactome for Prioritization of Candidate Disease Genes

(2008) Sebastian Köhler et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Identifying gene-disease associations using centrality on a literature mined gene-interaction network

(2008) A. Ozgur et al.   BIOINFORMATICS

Protein networks in disease

(2008) T. Ideker et al.   GENOME RESEARCH

Prioritization of candidate cancer genes—an aid to oncogenomic studies

(2008) Simon J. Furney et al.   NUCLEIC ACIDS RESEARCH

Human Protein Reference Database--2009 update

(2008) T. S. Keshava Prasad et al.   NUCLEIC ACIDS RESEARCH

Cancer is a Preventable Disease that Requires Major Lifestyle Changes

(2008) Preetha Anand et al.   PHARMACEUTICAL RESEARCH

An integrated approach to inferring gene-disease associations in humans

(2008) Predrag Radivojac et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS