Cooperation, Competition, and Specialized Metabolism in a Simplified Root Nodule Microbiome

A review on the plant microbiome: Ecology, functions, and emerging trends in microbial application

(2019) Stéphane Compant et al.   Journal of Advanced Research

Introducing THOR, a Model Microbiome for Genetic Dissection of Community Behavior

(2019) Gabriel L. Lozano et al.   mBio

Saccharibacteria (TM7) in the Human Oral Microbiome

(2019) B. Bor et al.   JOURNAL OF DENTAL RESEARCH

antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline

(2019) Kai Blin et al.   NUCLEIC ACIDS RESEARCH

Unprecedented bacterial community richness in soybean nodules vary with cultivar and water status

(2019) Hazem Sharaf et al.   Microbiome

Synthetic microbiota reveal priority effects and keystone strains in the Arabidopsis phyllosphere

(2019) Charlotte I. Carlström et al.   Nature Ecology & Evolution

High Spatial Resolution Imaging Mass Spectrometry Reveals Chemical Heterogeneity Across Bacterial Microcolonies

(2019) Rita de Cassia Pessotti et al.   ANALYTICAL CHEMISTRY

Structures of a dimodular nonribosomal peptide synthetase reveal conformational flexibility

(2019) Janice M. Reimer et al.   SCIENCE

Structure of ribosome-bound azole-modified peptide phazolicin rationalizes its species-specific mode of bacterial translation inhibition

(2019) Dmitrii Y. Travin et al.   Nature Communications

Observed metabolic asymmetry within soybean root nodules reflects unexpected complexity in rhizobacteria-legume metabolite exchange

(2018) Dušan Veličković et al.   ISME Journal

Rhizobia: from saprophytes to endosymbionts

(2018) Philip Poole et al.   NATURE REVIEWS MICROBIOLOGY

Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?

(2018) Joelle Sasse et al.   TRENDS IN PLANT SCIENCE

Compositional shifts in root-associated bacterial and archaeal microbiota track the plant life cycle in field-grown rice

(2018) Joseph A. Edwards et al.   PLOS BIOLOGY

Design of synthetic bacterial communities for predictable plant phenotypes

(2018) Sur Herrera Paredes et al.   PLOS BIOLOGY

Drought Stress and Root-Associated Bacterial Communities

(2018) Dan Naylor et al.   Frontiers in Plant Science

Exploring the Root Microbiome: Extracting Bacterial Community Data from the Soil, Rhizosphere, and Root Endosphere

(2018) Tuesday Simmons et al.   Jove-Journal of Visualized Experiments

Bipartite interactions, antibiotic production and biosynthetic potential of the Arabidopsis leaf microbiome

(2018) Eric J. N. Helfrich et al.   Nature Microbiology

Considering the Lives of Microbes in Microbial Communities

(2018) Elizabeth A. Shank   mSystems

In Search of Model Ecological Systems for Understanding Specialized Metabolism

(2018) Rita C. Pessotti et al.   mSystems

Microbial Interkingdom Interactions in Roots Promote Arabidopsis Survival

(2018) Paloma Durán et al.   CELL

MSiReader v1.0: Evolving Open-Source Mass Spectrometry Imaging Software for Targeted and Untargeted Analyses

(2017) Mark T. Bokhart et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Two cultivated legume plants reveal the enrichment process of the microbiome in the rhizocompartments

(2017) Xiao Xiao et al.   MOLECULAR ECOLOGY

Diverse bacterial taxa inhabit root nodules of lucerne (Medicago sativa L.) in New Zealand pastoral soils

(2017) Kathryn Wigley et al.   PLANT AND SOIL

Simplified and representative bacterial community of maize roots

(2017) Ben Niu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cowpea Nodules Harbor Non-rhizobial Bacterial Communities that Are Shaped by Soil Type Rather than Plant Genotype

(2017) Jakson Leite et al.   Frontiers in Plant Science

Synthetic cycle of the initiation module of a formylating nonribosomal peptide synthetase

(2016) Janice M. Reimer et al.   NATURE

Spatial structure, cooperation and competition in biofilms

(2016) Carey D. Nadell et al.   NATURE REVIEWS MICROBIOLOGY

Root nodule symbiosis inLotus japonicusdrives the establishment of distinctive rhizosphere, root, and nodule bacterial communities

(2016) Rafal Zgadzaj et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Paenibacillus medicaginis sp. nov. a chitinolytic endophyte isolated from a root nodule of alfalfa (Medicago sativa L.)

(2015) Wei-An Lai et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Functions, mechanisms and regulation of endophytic and epiphytic microbial communities of plants

(2015) Charles W. Bacon et al.   SYMBIOSIS

Induced systemic resistance against Botrytis cinerea by Micromonospora strains isolated from root nodules

(2015) Pilar Martínez-Hidalgo et al.   Frontiers in Microbiology

Spatiotemporal Monitoring of the Antibiome Secreted by Bacillus Biofilms on Plant Roots Using MALDI Mass Spectrometry Imaging

(2014) Delphine Debois et al.   ANALYTICAL CHEMISTRY

Selection for cheating across disparate environments in the legume-rhizobium mutualism

(2014) Stephanie S. Porter et al.   ECOLOGY LETTERS

Unraveling the plant microbiome: looking back and future perspectives

(2014) Gabriele Berg et al.   Frontiers in Microbiology

MALDI-Mass Spectrometric Imaging for the Investigation of Metabolites in Medicago truncatula Root Nodules

(2014) Erin Gemperline et al.   Jove-Journal of Visualized Experiments

Inside the root microbiome: Bacterial root endophytes and plant growth promotion

(2013) Jonathan R. Gaiero et al.   AMERICAN JOURNAL OF BOTANY

The Genotypic View of Social Interactions in Microbial Communities

(2013) Sara Mitri et al.   Annual Review of Genetics

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Methods for full resolution data exploration and visualization for large 2D and 3D mass spectrometry imaging datasets

(2013) Ivo Klinkert et al.   INTERNATIONAL JOURNAL OF MASS SPECTROMETRY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Single-plant, Sterile Microcosms for Nodulation and Growth of the Legume Plant Medicago truncatula with the Rhizobial Symbiont Sinorhizobium meliloti

(2013) Kathryn M. Jones et al.   Jove-Journal of Visualized Experiments

Diversity and Natural Functions of Antibiotics Produced by Beneficial and Plant Pathogenic Bacteria

(2012) Jos M. Raaijmakers et al.   Annual Review of Phytopathology

Exploring the plant-associated bacterial communities in Medicago sativa L

(2012) Francesco Pini et al.   BMC MICROBIOLOGY

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

The Rules of Engagement in the Legume-Rhizobial Symbiosis

(2011) Giles E.D. Oldroyd et al.   Annual Review of Genetics

Hidden Fungi, Emergent Properties: Endophytes and Microbiomes

(2011) Andrea Porras-Alfaro et al.   Annual Review of Phytopathology

Bioactive natural products from endophytes: A review

(2011) B. Guo et al.   APPLIED BIOCHEMISTRY AND MICROBIOLOGY

Root Nodulation: A Paradigm for How Plant-Microbe Symbiosis Influences Host Developmental Pathways

(2011) Guilhem J. Desbrosses et al.   Cell Host & Microbe

Characterization and localization of prodiginines from Streptomyces lividans suppressing Verticillium dahliae in the absence or presence of Arabidopsis thaliana

(2011) Holger Meschke et al.   ENVIRONMENTAL MICROBIOLOGY

Impact of rhizosphere factors on cyclic lipopeptide signature from the plant beneficial strain Bacillus amyloliquefaciensS499

(2011) Venant Nihorimbere et al.   FEMS MICROBIOLOGY ECOLOGY

The Medicago genome provides insight into the evolution of rhizobial symbioses

(2011) Nevin D. Young et al.   NATURE

The genus Micromonospora is widespread in legume root nodules: the example of Lupinus angustifolius

(2010) Martha E Trujillo et al.   ISME Journal

Accumulation of Pseudomonas-derived 2,4-diacetylphloroglucinol on wheat seedling roots is influenced by host cultivar

(2008) Patricia A. Okubara et al.   BIOLOGICAL CONTROL

Biocontrol Potential of Soybean Bacterial Endophytes Against Charcoal Rot Fungus, Rhizoctonia bataticola

(2008) M. Senthilkumar et al.   CURRENT MICROBIOLOGY

Phyllosphere microbiology with special reference to diversity and plant genotype

(2008) J.M. Whipps et al.   JOURNAL OF APPLIED MICROBIOLOGY

Rapid quantification of Bacillus subtilis antibiotics in the rhizosphere

(2008) Karen Kinsella et al.   SOIL BIOLOGY & BIOCHEMISTRY

Endophytic occupation of peanut root nodules by opportunistic Gammaproteobacteria

(2008) Fernando Ibáñez et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY