Evolution of vertebrate gill covers via shifts in an ancient Pou3f3 enhancer

Bichir external gills arise via heterochronic shift that accelerates hyoid arch development

(2019) Jan Stundl et al.   eLife

The pharynx of the stem-chondrichthyan Ptomacanthus and the early evolution of the gnathostome gill skeleton

(2019) Richard P. Dearden et al.   Nature Communications

Fox proteins are modular competency factors for facial cartilage and tooth specification

(2018) Pengfei Xu et al.   DEVELOPMENT

Essential Role of Nr2f Nuclear Receptors in Patterning the Vertebrate Upper Jaw

(2018) Lindsey Barske et al.   DEVELOPMENTAL CELL

An early chondrichthyan and the evolutionary assembly of a shark body plan

(2018) Michael I. Coates et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

High-Resolution Epigenomic Atlas of Human Embryonic Craniofacial Development

(2018) Andrea Wilderman et al.   Cell Reports

Gene bivalency at Polycomb domains regulates cranial neural crest positional identity

(2017) Maryline Minoux et al.   SCIENCE

Progressive Loss of Function in a Limb Enhancer during Snake Evolution

(2016) Evgeny Z. Kvon et al.   CELL

Ihha induces hybrid cartilage-bone cells during zebrafish jawbone regeneration

(2016) Sandeep Paul et al.   DEVELOPMENT

Competition between Jagged-Notch and Endothelin1 Signaling Selectively Restricts Cartilage Formation in the Zebrafish Upper Face

(2016) Lindsey Barske et al.   PLoS Genetics

Enhancer Divergence and cis-Regulatory Evolution in the Human and Chimp Neural Crest

(2015) Sara L. Prescott et al.   CELL

A gene expression map of the larval Xenopus laevis head reveals developmental changes underlying the evolution of new skeletal elements

(2015) Tyler Square et al.   DEVELOPMENTAL BIOLOGY

Iroquois Proteins Promote Skeletal Joint Formation by Maintaining Chondrocytes in an Immature State

(2015) Amjad Askary et al.   DEVELOPMENTAL CELL

The origin and early phylogenetic history of jawed vertebrates

(2015) Martin D. Brazeau et al.   NATURE

A shift in anterior–posterior positional information underlies the fin-to-limb evolution

(2015) Koh Onimaru et al.   eLife

Tn5 transposase and tagmentation procedures for massively scaled sequencing projects

(2014) Simone Picelli et al.   GENOME RESEARCH

Efficient generation of knock-in transgenic zebrafish carrying reporter/driver genes by CRISPR/Cas9-mediated genome engineering

(2014) Yukiko Kimura et al.   Scientific Reports

A Silurian placoderm with osteichthyan-like marginal jaw bones

(2013) Min Zhu et al.   NATURE

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

(2013) Jason D Buenrostro et al.   NATURE METHODS

Fine Tuning of Craniofacial Morphology by Distant-Acting Enhancers

(2013) C. Attanasio et al.   SCIENCE

Developmental evidence for serial homology of the vertebrate jaw and gill arch skeleton

(2013) J. Andrew Gillis et al.   Nature Communications

Electrosensory ampullary organs are derived from lateral line placodes in cartilaginous fishes

(2012) J. A. Gillis et al.   DEVELOPMENT

Uncovering cis-regulatory sequence requirements for context-specific transcription factor binding

(2012) J. O. Yanez-Cuna et al.   GENOME RESEARCH

A transcription activator-like effector toolbox for genome engineering

(2012) Neville E Sanjana et al.   Nature Protocols

Genome-wide occupancy links Hoxa2 to Wnt–β-catenin signaling in mouse embryonic development

(2012) Ian J. Donaldson et al.   NUCLEIC ACIDS RESEARCH

Developmental and evolutionary origins of the pharyngeal apparatus

(2012) Anthony Graham et al.   EvoDevo

Bmps and Id2a Act Upstream of Twist1 To Restrict Ectomesenchyme Potential of the Cranial Neural Crest

(2012) Ankita Das et al.   PLoS Genetics

Analysis of Sphingosine-1-phosphate signaling mutants reveals endodermal requirements for the growth but not dorsoventral patterning of jaw skeletal precursors

(2011) Bartosz Balczerski et al.   DEVELOPMENTAL BIOLOGY

Retinoic Acid Production by Endocardium and Epicardium Is an Injury Response Essential for Zebrafish Heart Regeneration

(2011) Kazu Kikuchi et al.   DEVELOPMENTAL CELL

Holocephalan embryos provide evidence for gill arch appendage reduction and opercular evolution in cartilaginous fishes

(2011) J. A. Gillis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The presence of an embryonic opercular flap in amniotes

(2011) J. Richardson et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

hand2 and Dlx genes specify dorsal, intermediate and ventral domains within zebrafish pharyngeal arches

(2010) J. C. Talbot et al.   DEVELOPMENT

Ancient Vertebrate Conserved Noncoding Elements Have Been Evolving Rapidly in Teleost Fishes

(2010) A. P. Lee et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evidence for the prepattern/cooption model of vertebrate jaw evolution

(2010) R. Cerny et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Normal table of postembryonic zebrafish development: Staging by externally visible anatomy of the living fish

(2009) David M. Parichy et al.   DEVELOPMENTAL DYNAMICS

Shared developmental mechanisms pattern the vertebrate gill arch and paired fin skeletons

(2009) J. A. Gillis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dlx genes pattern mammalian jaw primordium by regulating both lower jaw-specific and upper jaw-specific genetic programs

(2008) J. Jeong et al.   DEVELOPMENT