Comparative study on three viral enrichment approaches based on RNA extraction for plant virus/viroid detection using high-throughput sequencing

Electron Microscopy Methods for Virus Diagnosis and High Resolution Analysis of Viruses

(2019) Katja R. Richert-Pöggeler et al.   Frontiers in Microbiology

High Throughput Sequencing in Plant Virus Detection and Discovery

(2019) Dan E.V. Villamor et al.   PHYTOPATHOLOGY

Characterisation of a novel nucleorhabdovirus infecting alfalfa (Medicago sativa)

(2019) Yahya Z. A. Gaafar et al.   Virology Journal

First Report of physostegia chlorotic mottle virus on Tomato (Solanum lycopersicum) in Germany

(2018) Y. Z. A. Gaafar et al.   PLANT DISEASE

Discovery of Negative-Sense RNA Viruses in Trees Infected with Apple Rubbery Wood Disease by Next-Generation Sequencing

(2018) Michael E. Rott et al.   PLANT DISEASE

Application of HTS for Routine Plant Virus Diagnostics: State of the Art and Challenges

(2018) Hans J. Maree et al.   Frontiers in Plant Science

Quantification of Pea enation mosaic virus 1 and 2 during infection of Pisum sativum by one step real-time RT-PCR

(2017) Juliette Doumayrou et al.   JOURNAL OF VIROLOGICAL METHODS

Application of Next Generation Sequencing for Diagnostic Testing of Tree Fruit Viruses and Viroids

(2017) M. Rott et al.   PLANT DISEASE

Deep sequencing for discovery and evolutionary analysis of plant viruses

(2017) Marilyn J. Roossinck   VIRUS RESEARCH

Next Generation Sequencing for Detection and Discovery of Plant Viruses and Viroids: Comparison of Two Approaches

(2017) Anja Pecman et al.   Frontiers in Microbiology

High throughput sequencing reveals a novel fabavirus infecting sweet cherry

(2016) D. E. V. Villamor et al.   ARCHIVES OF VIROLOGY

Climate change and biological invasions: evidence, expectations, and response options

(2016) Philip E. Hulme   BIOLOGICAL REVIEWS

Screening for plant viruses by next generation sequencing using a modified double strand RNA extraction protocol with an internal amplification control

(2016) Prasad Kesanakurti et al.   JOURNAL OF VIROLOGICAL METHODS

A new virus discovered by immunocapture of double-stranded RNA, a rapid method for virus enrichment in metagenomic studies

(2016) Arnaud G. Blouin et al.   Molecular Ecology Resources

Plant domestication and the assembly of bacterial and fungal communities associated with strains of the common sunflower, Helianthus annuus

(2016) Jonathan W. Leff et al.   NEW PHYTOLOGIST

Red clover vein mosaic virus—A Novel Virus to New Zealand that is Widespread in Legumes

(2016) John Fletcher et al.   PLANT DISEASE

Next-generation sequencing for virus detection: covering all the bases

(2016) Marike Visser et al.   Virology Journal

Combined DECS Analysis and Next-Generation Sequencing Enable Efficient Detection of Novel Plant RNA Viruses

(2016) Hironobu Yanagisawa et al.   Viruses-Basel

Characterization of a Novel Polerovirus Infecting Maize in China

(2016) Sha Chen et al.   Viruses-Basel

Deep sequencing of dsRNAs recovered from mosaic-diseased pigeonpea reveals the presence of a novel emaravirus: pigeonpea sterility mosaic virus 2

(2015) Toufic Elbeaino et al.   ARCHIVES OF VIROLOGY

Divergent Viruses Discovered in Arthropods and Vertebrates Revise the Evolutionary History of the Flaviviridae and Related Viruses

(2015) Mang Shi et al.   JOURNAL OF VIROLOGY

Use of next-generation sequencing for the identification and characterization ofMaize chlorotic mottle virusandSugarcane mosaic viruscausing maize lethal necrosis in Kenya

(2012) I. P. Adams et al.   PLANT PATHOLOGY

Circular DNA genomics (circomics) exemplified for geminiviruses in bean crops and weeds of northeastern Brazil

(2012) Patricia Soares Wyant et al.   VIROLOGY

VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R

(2011) Hanbo Chen et al.   BMC BIOINFORMATICS

ggplot2: Elegant Graphics for Data Analysis

(2011) Cedric Ginestet   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES A-STATISTICS IN SOCIETY

The good viruses: viral mutualistic symbioses

(2011) Marilyn J. Roossinck   NATURE REVIEWS MICROBIOLOGY

Ecogenomics: using massively parallel pyrosequencing to understand virus ecology

(2010) MARILYN J. ROOSSINCK et al.   MOLECULAR ECOLOGY

Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: A generic method for diagnosis, discovery and sequencing of viruses

(2009) Jan F. Kreuze et al.   VIROLOGY

Viroid Replication: Rolling-Circles, Enzymes and Ribozymes

(2009) Ricardo Flores et al.   Viruses-Basel

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Climate change effects on physiology and population processes of hosts and vectors that influence the spread of hemipteran-borne plant viruses

(2008) TOMÁS CANTO et al.   GLOBAL CHANGE BIOLOGY