Comprehensive genome based analysis of Vibrio parahaemolyticus for identifying novel drug and vaccine molecules: Subtractive proteomics and vaccinomics approach

Differential recognition of Vibrio parahaemolyticus OmpU by TLRs in monocytes and macrophages for the induction of pro-inflammatory responses

(2019) Aakanksha Gulati et al.   INFECTION AND IMMUNITY

Reverse vaccinology approach to design a novel multi-epitope subunit vaccine against avian influenza A (H7N9) virus

(2019) Mahmudul Hasan et al.   MICROBIAL PATHOGENESIS

Vaccinomics strategy for developing a unique multi-epitope monovalent vaccine against Marburg marburgvirus

(2019) Mahmudul Hasan et al.   INFECTION GENETICS AND EVOLUTION

Immunoinformatics approaches for designing a novel multi epitope peptide vaccine against human norovirus (Norwalk virus)

(2019) Kazi Faizul Azim et al.   INFECTION GENETICS AND EVOLUTION

Subtractive proteomics to identify novel drug targets and reverse vaccinology for the development of chimeric vaccine against Acinetobacter baumannii

(2018) Vandana Solanki et al.   Scientific Reports

Evaluation of synergistic antimicrobial effect of vitamins (A, B1, B2, B6, B12, C, D, E and K) with antibiotics against resistant bacterial strains

(2018) Shakeel Shahzad et al.   Journal of Global Antimicrobial Resistance

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

(2018) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes

(2017) Martin Closter Jespersen et al.   NUCLEIC ACIDS RESEARCH

DrugBank 5.0: a major update to the DrugBank database for 2018

(2017) David S Wishart et al.   NUCLEIC ACIDS RESEARCH

Vibrio Pathogens: A Public Health Concern in Rural Water Resources in Sub-Saharan Africa

(2017) Charles Osunla et al.   International Journal of Environmental Research and Public Health

Prevalence, Antibiotic Susceptibility and Diversity of Vibrio parahaemolyticus Isolates in Seafood from South China

(2017) Ying Yang et al.   Frontiers in Microbiology

A multi-subunit based, thermodynamically stable model vaccine using combined immunoinformatics and protein structure based approach

(2016) Aarti Rana et al.   IMMUNOBIOLOGY

Monomerization alters the dynamics of the lid region inCampylobacter jejuniCstII: an MD simulation study

(2016) Pradeep Kumar Prabhakar et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

AllergenOnline: A peer-reviewed, curated allergen database to assess novel food proteins for potential cross-reactivity

(2016) Richard E. Goodman et al.   MOLECULAR NUTRITION & FOOD RESEARCH

Infection with Pathogens Transmitted Commonly Through Food and the Effect of Increasing Use of Culture-Independent Diagnostic Tests on Surveillance — Foodborne Diseases Active Surveillance Network, 10 U.S. Sites, 2012–2015

(2016) Jennifer Y. Huang et al.   MMWR-MORBIDITY AND MORTALITY WEEKLY REPORT

Long-Term Study of Vibrio parahaemolyticus Prevalence and Distribution in New Zealand Shellfish

(2015) C. D. Cruz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Management of cyanide toxicity in patients with burns

(2015) Louise MacLennan et al.   BURNS

Effect of Oral Eliglustat on Splenomegaly in Patients With Gaucher Disease Type 1

(2015) Pramod K. Mistry et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Improving Multi-Epitope Long Peptide Vaccine Potency by Using a Strategy that Enhances CD4+ T Help in BALB/c Mice

(2015) Haniyeh Ghaffari-Nazari et al.   PLoS One

Eliglustat tartrate for the treatment of adults with type 1 Gaucher disease

(2015) Lunawati Bennett et al.   Drug Design Development and Therapy

In silicodesign of a DNA-based HIV-1 multi-epitope vaccine for Chinese populations

(2015) Yi Yang et al.   Human Vaccines & Immunotherapeutics

Prevalence and antimicrobial susceptibility of Vibrio parahaemolyticus isolated from retail shrimps in Malaysia

(2015) Vengadesh Letchumanan et al.   Frontiers in Microbiology

Eliglustat tartrate

(2014) J.A. Shayman   DRUGS OF THE FUTURE

Epidemiology of foodborne disease outbreaks caused by Vibrio parahaemolyticus, China, 2003–2008

(2014) Yongning Wu et al.   FOOD CONTROL

Bacteriophage Therapy of a Vibrio parahaemolyticus Infection Caused by a Multiple-Antibiotic–Resistant O3:K6 Pandemic Clinical Strain

(2014) Jin Woo Jun et al.   JOURNAL OF INFECTIOUS DISEASES

AllerTOP v.2—a server for in silico prediction of allergens

(2014) Ivan Dimitrov et al.   JOURNAL OF MOLECULAR MODELING

iMODS: internal coordinates normal mode analysis server

(2014) José Ramón López-Blanco et al.   NUCLEIC ACIDS RESEARCH

The immune epitope database (IEDB) 3.0

(2014) Randi Vita et al.   NUCLEIC ACIDS RESEARCH

De Novo Structure Prediction of Globular Proteins Aided by Sequence Variation-Derived Contacts

(2014) Tomasz Kosciolek et al.   PLoS One

Pandemic Vibrio parahaemolyticus O3:K6 on the American continent

(2014) Jorge Velazquez-Roman et al.   Frontiers in Cellular and Infection Microbiology

Vibrio parahaemolyticus: a review on the pathogenesis, prevalence, and advance molecular identification techniques

(2014) Vengadesh Letchumanan et al.   Frontiers in Microbiology

Application of a subtractive genomics approach for in silico identification and characterization of novel drug targets in Mycobacterium tuberculosis F11

(2014) Md. Ismail Hosen et al.   Interdisciplinary Sciences-Computational Life Sciences

AllergenFP: allergenicity prediction by descriptor fingerprints

(2013) I. Dimitrov et al.   BIOINFORMATICS

Disulfide by Design 2.0: a web-based tool for disulfide engineering in proteins

(2013) Douglas B Craig et al.   BMC BIOINFORMATICS

Virulence determinants for Vibrio parahaemolyticus infection

(2013) Lingling Zhang et al.   CURRENT OPINION IN MICROBIOLOGY

DEG 10, an update of the database of essential genes that includes both protein-coding genes and noncoding genomic elements: Table 1.

(2013) Hao Luo et al.   NUCLEIC ACIDS RESEARCH

In Silico Approach for Predicting Toxicity of Peptides and Proteins

(2013) Sudheer Gupta et al.   PLoS One

Application of an improved loop-mediated isothermal amplification detection of Vibrio parahaemolyticus from various seafood samples

(2012) Li Wang   African Journal of Microbiology Research

Evidence-based Use of Statins for Primary Prevention of Cardiovascular Disease

(2012) C. Michael Minder et al.   AMERICAN JOURNAL OF MEDICINE

Prevalence of Vibrio parahaemolyticus in oyster and clam culturing environments in Taiwan

(2012) Wei-Ting Yu et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

The role of type III secretion System 2 in Vibrio parahaemolyticus pathogenicity

(2012) Hyeilin Ham et al.   JOURNAL OF MICROBIOLOGY

The Effects of Simvastatin or Interferon-α on Infectivity of Human Norovirus Using a Gnotobiotic Pig Model for the Study of Antivirals

(2012) Kwonil Jung et al.   PLoS One

Use of chemicals and biological products in Asian aquaculture and their potential environmental risks: a critical review

(2012) Andreu Rico et al.   Reviews in Aquaculture

Improving the Physical Realism and Structural Accuracy of Protein Models by a Two-Step Atomic-Level Energy Minimization

(2011) Dong Xu et al.   BIOPHYSICAL JOURNAL

Origin of Vibrio parahaemolyticus O3:K6 pandemic clone

(2011) Guoxiang Chao et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

In silico subtractive genomics for target identification in human bacterial pathogens

(2010) Debmalya Barh et al.   DRUG DEVELOPMENT RESEARCH

Occurrence of Toxigenic Vibrio parahaemolyticus Strains in Shrimp in Iran

(2010) Ebrahim Rahimi et al.   Foodborne Pathogens and Disease

Contribution of Vibrio parahaemolyticus Virulence Factors to Cytotoxicity, Enterotoxicity, and Lethality in Mice

(2010) H. Hiyoshi et al.   INFECTION AND IMMUNITY

MolProbity: all-atom structure validation for macromolecular crystallography

(2009) Vincent B. Chen et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

FireDock: a web server for fast interaction refinement in molecular docking

(2008) E. Mashiach et al.   NUCLEIC ACIDS RESEARCH