Methods of analysis of chloroplast genomes of C3, Kranz type C4 and Single Cell C4 photosynthetic members of Chenopodiaceae

Wild Origins of Macadamia Domestication Identified Through Intraspecific Chloroplast Genome Sequencing

(2019) Catherine J. Nock et al.   Frontiers in Plant Science

OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes

(2019) Stephan Greiner et al.   NUCLEIC ACIDS RESEARCH

Chloroplast variation is incongruent with classification of the Australian bloodwood eucalypts (genus Corymbia, family Myrtaceae)

(2018) Tanja M. Schuster et al.   PLoS One

The complete plastid genome of Suaeda malacosperma (Amaranthaceae/Chenopodiaceae), a vulnerable halophyte in coastal regions of Korea and Japan

(2018) Jong-Soo Park et al.   Mitochondrial DNA Part B-Resources

Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case

(2018) Weiwen Wang et al.   BMC GENOMICS

On the brink: the highly reduced plastomes of nonphotosynthetic Ericaceae

(2017) Thomas W. A. Braukmann et al.   NEW PHYTOLOGIST

GeSeq – versatile and accurate annotation of organelle genomes

(2017) Michael Tillich et al.   NUCLEIC ACIDS RESEARCH

One-third of the plastid genes evolved under positive selection in PACMAD grasses

(2017) Anthony Piot et al.   PLANTA

Transit peptide elements mediate selective protein targeting to two different types of chloroplasts in the single-cell C4 species Bienertia sinuspersici

(2017) Diana Wimmer et al.   Scientific Reports

Plastome Rearrangements in the “Adenocalymma-Neojobertia” Clade (Bignonieae, Bignoniaceae) and Its Phylogenetic Implications

(2017) Luiz H. M. Fonseca et al.   Frontiers in Plant Science

Application of a Simplified Method of Chloroplast Enrichment to Small Amounts of Tissue for Chloroplast Genome Sequencing

(2017) Shota Sakaguchi et al.   Applications in Plant Sciences

The first complete chloroplast genome sequences of Ulmus species by de novo sequencing: Genome comparative and taxonomic position analysis

(2017) Li-Hui Zuo et al.   PLoS One

Large-Scale Comparative Analysis Reveals the Mechanisms Driving Plastomic Compaction, Reduction, and Inversions in Conifers II (Cupressophytes)

(2016) Chung-Shien Wu et al.   Genome Biology and Evolution

Strategies for complete plastid genome sequencing

(2016) Alex D. Twyford et al.   Molecular Ecology Resources

Expansion of inverted repeat does not decrease substitution rates in Pelargonium plastid genomes

(2016) Mao-Lun Weng et al.   NEW PHYTOLOGIST

Implementation of Whole Genome Sequencing (WGS) for Identification and Characterization of Shiga Toxin-Producing Escherichia coli (STEC) in the United States

(2016) Rebecca L. Lindsey et al.   Frontiers in Microbiology

Complete Chloroplast Genome of Nicotiana otophora and its Comparison with Related Species

(2016) Sajjad Asaf et al.   Frontiers in Plant Science

The Complete Chloroplast Genome Sequences for Four Amaranthus Species (Amaranthaceae)

(2016) Lindsay Chaney et al.   Applications in Plant Sciences

Comparative analysis of the complete chloroplast genome sequences in psammophyticHaloxylonspecies (Amaranthaceae)

(2016) Wenpan Dong et al.   PeerJ

The complete chloroplast genome sequence of Bienertia sinuspersici

(2016) Beomsoo Kim et al.   Mitochondrial DNA Part B-Resources

The complete chloroplast genome of queen’s crape-myrtle(Lagerstroemia macrocarpa)

(2016) Cuihua Gu et al.   Mitochondrial DNA Part B-Resources

Correction to "Comparative analysis of complete chloroplast genome sequence and inversion variation in Lasthenia burkei (Madieae, Asteraceae)"

(2015) J. F. Walker et al.   AMERICAN JOURNAL OF BOTANY

Developmental and Subcellular Organization of Single-Cell C4 Photosynthesis in Bienertia sinuspersici Determined by Large-Scale Proteomics and cDNA Assembly from 454 DNA Sequencing

(2015) Sascha Offermann et al.   JOURNAL OF PROTEOME RESEARCH

Evidence for horizontal transfer of mitochondrial DNA to the plastid genome in a bamboo genus

(2015) Peng-Fei Ma et al.   Scientific Reports

Sequencing depth and coverage: key considerations in genomic analyses

(2014) David Sims et al.   NATURE REVIEWS GENETICS

Horizontal Transfer of DNA from the Mitochondrial to the Plastid Genome and Its Subsequent Evolution in Milkweeds (Apocynaceae)

(2013) Shannon C.K. Straub et al.   Genome Biology and Evolution

Sequencing Angiosperm Plastid Genomes Made Easy: A Complete Set of Universal Primers and a Case Study on the Phylogeny of Saxifragales

(2013) Wenpan Dong et al.   Genome Biology and Evolution

One decade after the discovery of single-cell C4 species in terrestrial plants: what did we learn about the minimal requirements of C4 photosynthesis?

(2013) Richard M. Sharpe et al.   PHOTOSYNTHESIS RESEARCH

The Complete Chloroplast Genome Sequence of the Medicinal Plant Salvia miltiorrhiza

(2013) Jun Qian et al.   PLoS One

The Complete Chloroplast Genome of Banana (Musa acuminata, Zingiberales): Insight into Plastid Monocotyledon Evolution

(2013) Guillaume Martin et al.   PLoS One

Effects of GC Bias in Next-Generation-Sequencing Data on De Novo Genome Assembly

(2013) Yen-Chun Chen et al.   PLoS One

Coverage Bias and Sensitivity of Variant Calling for Four Whole-genome Sequencing Technologies

(2013) Nora Rieber et al.   PLoS One

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Highly Variable Chloroplast Markers for Evaluating Plant Phylogeny at Low Taxonomic Levels and for DNA Barcoding

(2012) Wenpan Dong et al.   PLoS One

Sequencing of Chloroplast Genome Using Whole Cellular DNA and Solexa Sequencing Technology

(2012) Jian Wu et al.   Frontiers in Plant Science

Comparison of the two major classes of assembly algorithms: overlap-layout-consensus and de-bruijn-graph

(2011) Z. Li et al.   Briefings in Functional Genomics

The C4 plant lineages of planet Earth

(2011) R. F. Sage et al.   JOURNAL OF EXPERIMENTAL BOTANY

Chloroplast genomes of photosynthetic eukaryotes

(2011) Beverley R. Green   PLANT JOURNAL

Resolving the Compartmentation and Function of C4 Photosynthesis in the Single-Cell C4 Species Bienertia sinuspersici

(2011) S. Offermann et al.   PLANT PHYSIOLOGY

High-Throughput Sequencing of Six Bamboo Chloroplast Genomes: Phylogenetic Implications for Temperate Woody Bamboos (Poaceae: Bambusoideae)

(2011) Yun-Jie Zhang et al.   PLoS One

The Regulation of Gene Expression Required for C4Photosynthesis

(2010) Julian M. Hibberd et al.   Annual Review of Plant Biology

Structure and biogenesis of the chloroplast NAD(P)H dehydrogenase complex

(2010) Lianwei Peng et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Chemistry and Biotechnology of Carotenoids

(2010) K. K. Namitha et al.   CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION

COMPLEX EVOLUTIONARY TRANSITIONS AND THE SIGNIFICANCE OF C3-C4 INTERMEDIATE FORMS OF PHOTOSYNTHESIS IN MOLLUGINACEAE

(2010) Pascal-Antoine Christin et al.   EVOLUTION

The Complete Chloroplast Genome Sequence of Date Palm (Phoenix dactylifera L.)

(2010) Meng Yang et al.   PLoS One

The complete chloroplast genome of tall fescue (Lolium arundinaceum ; Poaceae) and comparison of whole plastomes from the family Poaceae

(2009) A. Bruce Cahoon et al.   AMERICAN JOURNAL OF BOTANY

Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots

(2008) Rui-Jiang Wang et al.   BMC EVOLUTIONARY BIOLOGY

Comparative chloroplast genomics and phylogenetics of Fagopyrum esculentum ssp. ancestrale – A wild ancestor of cultivated buckwheat

(2008) Maria D Logacheva et al.   BMC PLANT BIOLOGY