High-throughput fluorescence microscopic analysis of protein abundance and localization in budding yeast

Incomplete proteasomal degradation of green fluorescent proteins in the context of tandem fluorescent protein timers

(2016) Anton Khmelinskii et al.   MOLECULAR BIOLOGY OF THE CELL

Yeast Proteome Dynamics from Single Cell Imaging and Automated Analysis

(2015) Yolanda T. Chong et al.   CELL

Lipid Droplets Are Essential for Efficient Clearance of Cytosolic Inclusion Bodies

(2015) Ofer Moldavski et al.   DEVELOPMENTAL CELL

Millisecond single-molecule localization microscopy combined with convolution analysis and automated image segmentation to determine protein concentrations in complexly structured, functional cells, one cell at a time

(2015) Adam J. M. Wollman et al.   FARADAY DISCUSSIONS

High-throughput microfluidics to control and measure signaling dynamics in single yeast cells

(2015) Anders S Hansen et al.   Nature Protocols

Plasmids for C-terminal tagging inSaccharomyces cerevisiaethat contain improved GFP proteins, Envy and Ivy

(2015) Christian J. Slubowski et al.   YEAST

Cmr1/WDR76 defines a nuclear genotoxic stress body linking genome integrity and protein quality control

(2015) Irene Gallina et al.   Nature Communications

Millisecond single-molecule localization microscopy combined with convolution analysis and automated image segmentation to determine protein concentrations in complexly structured, functional cells, one cell at a time

(2015) Adam J. M. Wollman et al.   FARADAY DISCUSSIONS

Genetic Regulation of Dna2 Localization During the DNA Damage Response

(2015) Askar Yimit et al.   G3-Genes Genomes Genetics

Structured illumination with particle averaging reveals novel roles for yeast centrosome components during duplication

(2015) Shannon Burns et al.   eLife

A Protein-Tagging System for Signal Amplification in Gene Expression and Fluorescence Imaging

(2014) Marvin E. Tanenbaum et al.   CELL

Heritability and genetic basis of protein level variation in an outbred population

(2014) Leopold Parts et al.   GENOME RESEARCH

Genome-wide analysis of Saccharomyces cerevisiae identifies cellular processes affecting intracellular aggregation of Alzheimer's amyloid-β42: importance of lipid homeostasis

(2014) S. Nair et al.   MOLECULAR BIOLOGY OF THE CELL

Protein quality control at the inner nuclear membrane

(2014) Anton Khmelinskii et al.   NATURE

Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells

(2014) Nils A Kulak et al.   NATURE METHODS

High-Resolution Mapping of Protein Concentration Reveals Principles of Proteome Architecture and Adaptation

(2014) Emmanuel D. Levy et al.   Cell Reports

Tracking protein turnover and degradation by microscopy: photo-switchable versus time-encoded fluorescent proteins

(2014) M. Knop et al.   Open Biology

Formation and dissociation of proteasome storage granules are regulated by cytosolic pH

(2013) Lee Zeev Peters et al.   JOURNAL OF CELL BIOLOGY

Stochastic association of neighboring replicons creates replication factories in budding yeast

(2013) Nazan Saner et al.   JOURNAL OF CELL BIOLOGY

A novel single-cell screening platform reveals proteome plasticity during yeast stress responses

(2013) Michal Breker et al.   JOURNAL OF CELL BIOLOGY

Promoter decoding of transcription factor dynamics involves a trade-off between noise and control of gene expression

(2013) A. S. Hansen et al.   Molecular Systems Biology

Genome-wide single-cell-level screen for protein abundance and localization changes in response to DNA damage in S. cerevisiae

(2013) Aprotim Mazumder et al.   NUCLEIC ACIDS RESEARCH

Improved Blue, Green, and Red Fluorescent Protein Tagging Vectors for S. cerevisiae

(2013) Sidae Lee et al.   PLoS One

A chemostat array enables the spatio-temporal analysis of the yeast proteome

(2013) N. Denervaud et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

R-loop-mediated genome instability in mRNA cleavage and polyadenylation mutants

(2012) P. C. Stirling et al.   GENES & DEVELOPMENT

Tandem fluorescent protein timers for in vivo analysis of protein dynamics

(2012) Anton Khmelinskii et al.   NATURE BIOTECHNOLOGY

Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress

(2012) Johnny M. Tkach et al.   NATURE CELL BIOLOGY

Improving FRET dynamic range with bright green and red fluorescent proteins

(2012) Amy J Lam et al.   NATURE METHODS

Secretory pathway genes assessed by high-throughput microscopy and synthetic genetic array analysis

(2011) Peter W. Bircham et al.   Molecular BioSystems

A dynamic model of proteome changes reveals new roles for transcript alteration in yeast

(2011) M. V. Lee et al.   Molecular Systems Biology

Systematic exploration of essential yeast gene function with temperature-sensitive mutants

(2011) Zhijian Li et al.   NATURE BIOTECHNOLOGY

Integrating high-throughput genetic interaction mapping and high-content screening to explore yeast spindle morphogenesis

(2010) Franco J. Vizeacoumar et al.   JOURNAL OF CELL BIOLOGY

Full Dynamic Range Proteome Analysis of S. cerevisiae by Targeted Proteomics

(2009) Paola Picotti et al.   CELL

A Photostable Green Fluorescent Protein Variant for Analysis of Protein Localization inCandida albicans

(2009) Chengda Zhang et al.   EUKARYOTIC CELL

A Rab escort protein integrates the secretion system with TOR signaling and ribosome biogenesis

(2009) J. Singh et al.   GENES & DEVELOPMENT

A genome-wide screen for genes affecting eisosomes reveals Nce102 function in sphingolipid signaling

(2009) Florian Fröhlich et al.   JOURNAL OF CELL BIOLOGY

Construction and application of a protein and genetic interaction network (yeast interactome)

(2009) Gregory R. Stuart et al.   NUCLEIC ACIDS RESEARCH

Widespread reorganization of metabolic enzymes into reversible assemblies upon nutrient starvation

(2009) R. Narayanaswamy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A high-throughput method to globally study the organelle morphology in S. cerevisiae

(2009) Shabnam Tavassoli et al.   Jove-Journal of Visualized Experiments

Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast

(2008) Lyris M. F. de Godoy et al.   NATURE